Speed up Equilibrium init and changing resolution #633
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f0uriest
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run_benchmarks
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| benchmark_name | dt(%) | dt(s) | t_new(s) | t_old(s) |
| ------------------------------- | ------------------- | ------------------- | ------------------ | ------------------ |
test_build_transform_fft_lowres | -2.13+/-2.85 | -3.17e-04+/-4.2e-04 | 1.45e-02+/-3.4e-04 | 1.48e-02+/-2.5e-04 |
test_build_transform_fft_midres | +0.01+/-2.42 | +1.89e-05+/-3.1e-03 | 1.26e-01+/-6.3e-04 | 1.26e-01+/-3.0e-03 |
test_build_transform_fft_highres | +0.68+/-1.64 | +4.03e-03+/-9.7e-03 | 5.97e-01+/-2.6e-03 | 5.93e-01+/-9.4e-03 |
-test_equilibrium_init_lowres | +64.01+/-8.47 | +2.18e-01+/-2.9e-02 | 5.59e-01+/-2.9e-02 | 3.41e-01+/-3.7e-03 |
+test_equilibrium_init_medres | -74.86+/-1.85 | -2.09e+00+/-5.1e-02 | 7.01e-01+/-3.6e-02 | 2.79e+00+/-3.7e-02 |
+test_equilibrium_init_highres | -86.95+/-1.93 | -8.09e+00+/-1.8e-01 | 1.21e+00+/-4.0e-02 | 9.30e+00+/-1.8e-01 |
test_objective_compile_heliotron | +1.69+/-2.49 | +2.59e-01+/-3.8e-01 | 1.56e+01+/-1.8e-01 | 1.53e+01+/-3.4e-01 |
test_objective_compile_dshape_current | +2.00+/-5.26 | +1.04e-01+/-2.7e-01 | 5.33e+00+/-2.3e-01 | 5.22e+00+/-1.5e-01 |
test_objective_compile_atf | -0.02+/-3.07 | -3.82e-03+/-5.0e-01 | 1.62e+01+/-4.1e-01 | 1.62e+01+/-2.8e-01 |
test_objective_compute_heliotron | +1.58+/-261.44 | +7.11e-04+/-1.2e-01 | 4.56e-02+/-8.3e-02 | 4.49e-02+/-8.3e-02 |
test_objective_compute_dshape_current | -0.18+/-318.50 | -3.76e-05+/-6.5e-02 | 2.03e-02+/-4.6e-02 | 2.04e-02+/-4.6e-02 |
test_objective_compute_atf | -3.06+/-262.56 | -1.39e-03+/-1.2e-01 | 4.40e-02+/-8.3e-02 | 4.54e-02+/-8.6e-02 |
+test_objective_jac_heliotron | -5.06+/-1.38 | -3.72e-01+/-1.0e-01 | 6.99e+00+/-9.1e-02 | 7.36e+00+/-4.5e-02 |
test_objective_jac_dshape_current | -2.43+/-3.84 | -3.94e-03+/-6.2e-03 | 1.58e-01+/-4.8e-03 | 1.62e-01+/-4.0e-03 |
+test_objective_jac_atf | -0.80+/-0.70 | -5.77e-02+/-5.0e-02 | 7.14e+00+/-3.0e-02 | 7.19e+00+/-4.0e-02 |
test_perturb_1 | -5.62+/-44.64 | -5.80e-01+/-4.6e+00 | 9.74e+00+/-3.3e+00 | 1.03e+01+/-3.2e+00 |
+test_perturb_2 | -4.05+/-3.07 | -7.01e-01+/-5.3e-01 | 1.66e+01+/-3.0e-01 | 1.73e+01+/-4.4e-01 | |
Codecov Report
Additional details and impacted files@@ Coverage Diff @@
## master #633 +/- ##
==========================================
- Coverage 94.27% 94.24% -0.04%
==========================================
Files 78 78
Lines 18152 18126 -26
==========================================
- Hits 17113 17083 -30
- Misses 1039 1043 +4
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dpanici
approved these changes
Aug 24, 2023
ddudt
approved these changes
Aug 24, 2023
dpanici
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Apr 8, 2025
…#1673) Updates the requirements on [pytest-cov](https://github.com/pytest-dev/pytest-cov) to permit the latest version. <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst">pytest-cov's changelog</a>.</em></p> <blockquote> <h2>6.1.1 (2025-04-05)</h2> <ul> <li>Fixed breakage that occurs when <code>--cov-context</code> and the <code>no_cover</code> marker are used together.</li> </ul> <h2>6.1.0 (2025-04-01)</h2> <ul> <li>Change terminal output to use full width lines for the coverage header. Contributed by Tsvika Shapira in <code>[#678](pytest-dev/pytest-cov#678) <https://github.com/pytest-dev/pytest-cov/pull/678></code>_.</li> <li>Removed unnecessary CovFailUnderWarning. Fixes <code>[#675](pytest-dev/pytest-cov#675) <https://github.com/pytest-dev/pytest-cov/issues/675></code>_.</li> <li>Fixed the term report not using the precision specified via <code>--cov-precision</code>.</li> </ul> <h2>6.0.0 (2024-10-29)</h2> <ul> <li>Updated various documentation inaccuracies, especially on subprocess handling.</li> <li>Changed fail under checks to use the precision set in the coverage configuration. Now it will perform the check just like <code>coverage report</code> would.</li> <li>Added a <code>--cov-precision</code> cli option that can override the value set in your coverage configuration.</li> <li>Dropped support for now EOL Python 3.8.</li> </ul> <h2>5.0.0 (2024-03-24)</h2> <ul> <li>Removed support for xdist rsync (now deprecated). Contributed by Matthias Reichenbach in <code>[#623](pytest-dev/pytest-cov#623) <https://github.com/pytest-dev/pytest-cov/pull/623></code>_.</li> <li>Switched docs theme to Furo.</li> <li>Various legacy Python cleanup and CI improvements. Contributed by Christian Clauss and Hugo van Kemenade in <code>[#630](pytest-dev/pytest-cov#630) <https://github.com/pytest-dev/pytest-cov/pull/630></code><em>, <code>[#631](pytest-dev/pytest-cov#631) <https://github.com/pytest-dev/pytest-cov/pull/631></code></em>, <code>[#632](pytest-dev/pytest-cov#632) <https://github.com/pytest-dev/pytest-cov/pull/632></code>_ and <code>[#633](pytest-dev/pytest-cov#633) <https://github.com/pytest-dev/pytest-cov/pull/633></code>_.</li> <li>Added a <code>pyproject.toml</code> example in the docs. Contributed by Dawn James in <code>[#626](pytest-dev/pytest-cov#626) <https://github.com/pytest-dev/pytest-cov/pull/626></code>_.</li> <li>Modernized project's pre-commit hooks to use ruff. Initial POC contributed by Christian Clauss in <code>[#584](pytest-dev/pytest-cov#584) <https://github.com/pytest-dev/pytest-cov/pull/584></code>_.</li> <li>Dropped support for Python 3.7.</li> </ul> <h2>4.1.0 (2023-05-24)</h2> <ul> <li>Updated CI with new Pythons and dependencies.</li> <li>Removed rsyncdir support. This makes pytest-cov compatible with xdist 3.0. Contributed by Sorin Sbarnea in <code>[#558](pytest-dev/pytest-cov#558) <https://github.com/pytest-dev/pytest-cov/pull/558></code>_.</li> <li>Optimized summary generation to not be performed if no reporting is active (for example, when <code>--cov-report=''</code> is used without <code>--cov-fail-under</code>). Contributed by Jonathan Stewmon in <code>[#589](pytest-dev/pytest-cov#589) <https://github.com/pytest-dev/pytest-cov/pull/589></code>_.</li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/9463242e3a7bc18a56b8f18c01b4dfb50087e5ed"><code>9463242</code></a> Bump version: 6.1.0 → 6.1.1</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/7f2781b47fc9bd4a8e94ff86b4f69f5959c3d907"><code>7f2781b</code></a> Update changelog.</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/a59548f3adcb757ea8afcb40d8d849af49f6e925"><code>a59548f</code></a> Allow the context plugin to check if the controller is running or not. Fixes ...</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/10f8cde38c3b0aaf2c75d9ed62d4f333d8809d96"><code>10f8cde</code></a> Bump version: 6.0.0 → 6.1.0</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/10b14afffcd53b19967785c0b3e8b35ebac70b6f"><code>10b14af</code></a> Update changelog.</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/aa57aed273475b4f9975cc9a8a1662b336718662"><code>aa57aed</code></a> Refactor a bit the internals to be a bit less boilerplatey and have more clar...</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/e760099a7fd5f49c235dc798bf7f222c0372b7e3"><code>e760099</code></a> Make sure the CLI precision is used when creating report. Fixes <a href="https://redirect.github.com/pytest-dev/pytest-cov/issues/674">#674</a>.</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/44540e1e9f02f3b69b62834636cf3057edc960d6"><code>44540e1</code></a> Remove unnecessary CovFailUnderWarning. Closes <a href="https://redirect.github.com/pytest-dev/pytest-cov/issues/675">#675</a>.</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/204af146f8f4ff03076825a693ee6aef587deb6b"><code>204af14</code></a> Update changelog.</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/089e7bb5c16dcfdedd54f27fda094ccb3eeaae2c"><code>089e7bb</code></a> Upgrade ruff.</li> <li>Additional commits viewable in <a href="https://github.com/pytest-dev/pytest-cov/compare/v2.6.0...v6.1.1">compare view</a></li> </ul> </details> <br /> Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. 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Refactors some stuff to use JAX loops for creating initial guess and changing resolution, reduces equilibrium init time substantially at high resolution.
Resolves #342