Don't overwrite equilibria during automatic continuation method #584
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f0uriest
commented
Jul 15, 2023
f0uriest
commented
- Existing automatic continuation method would overwrite equilibria from intermediate steps, so final family wouldn't show every step along the way
- Fixes it so that each step is now saved
Codecov Report
Additional details and impacted files@@ Coverage Diff @@
## master #584 +/- ##
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Coverage 94.20% 94.20%
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Files 75 75
Lines 17195 17197 +2
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+ Hits 16199 16201 +2
Misses 996 996
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dpanici
approved these changes
Jul 16, 2023
dpanici
added a commit
that referenced
this pull request
Apr 8, 2025
…#1673) Updates the requirements on [pytest-cov](https://github.com/pytest-dev/pytest-cov) to permit the latest version. <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst">pytest-cov's changelog</a>.</em></p> <blockquote> <h2>6.1.1 (2025-04-05)</h2> <ul> <li>Fixed breakage that occurs when <code>--cov-context</code> and the <code>no_cover</code> marker are used together.</li> </ul> <h2>6.1.0 (2025-04-01)</h2> <ul> <li>Change terminal output to use full width lines for the coverage header. Contributed by Tsvika Shapira in <code>[#678](pytest-dev/pytest-cov#678) <https://github.com/pytest-dev/pytest-cov/pull/678></code>_.</li> <li>Removed unnecessary CovFailUnderWarning. Fixes <code>[#675](pytest-dev/pytest-cov#675) <https://github.com/pytest-dev/pytest-cov/issues/675></code>_.</li> <li>Fixed the term report not using the precision specified via <code>--cov-precision</code>.</li> </ul> <h2>6.0.0 (2024-10-29)</h2> <ul> <li>Updated various documentation inaccuracies, especially on subprocess handling.</li> <li>Changed fail under checks to use the precision set in the coverage configuration. Now it will perform the check just like <code>coverage report</code> would.</li> <li>Added a <code>--cov-precision</code> cli option that can override the value set in your coverage configuration.</li> <li>Dropped support for now EOL Python 3.8.</li> </ul> <h2>5.0.0 (2024-03-24)</h2> <ul> <li>Removed support for xdist rsync (now deprecated). Contributed by Matthias Reichenbach in <code>[#623](pytest-dev/pytest-cov#623) <https://github.com/pytest-dev/pytest-cov/pull/623></code>_.</li> <li>Switched docs theme to Furo.</li> <li>Various legacy Python cleanup and CI improvements. Contributed by Christian Clauss and Hugo van Kemenade in <code>[#630](pytest-dev/pytest-cov#630) <https://github.com/pytest-dev/pytest-cov/pull/630></code><em>, <code>[#631](pytest-dev/pytest-cov#631) <https://github.com/pytest-dev/pytest-cov/pull/631></code></em>, <code>[#632](pytest-dev/pytest-cov#632) <https://github.com/pytest-dev/pytest-cov/pull/632></code>_ and <code>[#633](pytest-dev/pytest-cov#633) <https://github.com/pytest-dev/pytest-cov/pull/633></code>_.</li> <li>Added a <code>pyproject.toml</code> example in the docs. Contributed by Dawn James in <code>[#626](pytest-dev/pytest-cov#626) <https://github.com/pytest-dev/pytest-cov/pull/626></code>_.</li> <li>Modernized project's pre-commit hooks to use ruff. Initial POC contributed by Christian Clauss in <code>[#584](pytest-dev/pytest-cov#584) <https://github.com/pytest-dev/pytest-cov/pull/584></code>_.</li> <li>Dropped support for Python 3.7.</li> </ul> <h2>4.1.0 (2023-05-24)</h2> <ul> <li>Updated CI with new Pythons and dependencies.</li> <li>Removed rsyncdir support. This makes pytest-cov compatible with xdist 3.0. Contributed by Sorin Sbarnea in <code>[#558](pytest-dev/pytest-cov#558) <https://github.com/pytest-dev/pytest-cov/pull/558></code>_.</li> <li>Optimized summary generation to not be performed if no reporting is active (for example, when <code>--cov-report=''</code> is used without <code>--cov-fail-under</code>). Contributed by Jonathan Stewmon in <code>[#589](pytest-dev/pytest-cov#589) <https://github.com/pytest-dev/pytest-cov/pull/589></code>_.</li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/9463242e3a7bc18a56b8f18c01b4dfb50087e5ed"><code>9463242</code></a> Bump version: 6.1.0 → 6.1.1</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/7f2781b47fc9bd4a8e94ff86b4f69f5959c3d907"><code>7f2781b</code></a> Update changelog.</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/a59548f3adcb757ea8afcb40d8d849af49f6e925"><code>a59548f</code></a> Allow the context plugin to check if the controller is running or not. Fixes ...</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/10f8cde38c3b0aaf2c75d9ed62d4f333d8809d96"><code>10f8cde</code></a> Bump version: 6.0.0 → 6.1.0</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/10b14afffcd53b19967785c0b3e8b35ebac70b6f"><code>10b14af</code></a> Update changelog.</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/aa57aed273475b4f9975cc9a8a1662b336718662"><code>aa57aed</code></a> Refactor a bit the internals to be a bit less boilerplatey and have more clar...</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/e760099a7fd5f49c235dc798bf7f222c0372b7e3"><code>e760099</code></a> Make sure the CLI precision is used when creating report. Fixes <a href="https://redirect.github.com/pytest-dev/pytest-cov/issues/674">#674</a>.</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/44540e1e9f02f3b69b62834636cf3057edc960d6"><code>44540e1</code></a> Remove unnecessary CovFailUnderWarning. Closes <a href="https://redirect.github.com/pytest-dev/pytest-cov/issues/675">#675</a>.</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/204af146f8f4ff03076825a693ee6aef587deb6b"><code>204af14</code></a> Update changelog.</li> <li><a href="https://github.com/pytest-dev/pytest-cov/commit/089e7bb5c16dcfdedd54f27fda094ccb3eeaae2c"><code>089e7bb</code></a> Upgrade ruff.</li> <li>Additional commits viewable in <a href="https://github.com/pytest-dev/pytest-cov/compare/v2.6.0...v6.1.1">compare view</a></li> </ul> </details> <br /> Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details>
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