Curated List of Biomarkers, Blood Tests, and Blood Tracking

R package for microbiome biomarker discovery

Learn interpretable computational phenotyping models from k-merized genomic data

🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data

OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.

TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020

Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis

Spatial profiling toolbox for spatial characterization of tissue microenvironment (https://oncopathtk.org)

Single cell analysis using Low Resource

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)

Predictive Biomarker Modeling Framework (PBMF)

A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics

👀 An all-purpose eye tracking web application and API for Alzheimer's disease research (3 tasks, <3 mins). 1st place in the 2021 CNT hackathon https://www.cnthackathon.org/

Elixer AI is a RAG-enabled LLM platform for secure, 100% accurate biomarker-based medical report analysis. It supports blood, urine, stool, sperm, and pap tests, with future-ready vision-LMM integration for imaging, plus EHR, hospital, and appointment support—built on React, Node, MongoDB, AWS, and Gemini AI.

Investigating the reproducibility of federated GNN models

In this module, you will learn how to use a Docker container to analyze amplicon sequencing metagenomics data with common tools such as qiime2 and PICRUSt2

Python implementation of the feature relevance interval (FRI) algorithm

Multimodal Context-Aware Detection of Glioma Biomarkers using MRI and WSI

Code implementation of SHRED variants