docs: improved help and docs #91
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Caution Review failedThe pull request is closed. 📝 WalkthroughWalkthroughThe changes update the release workflow by splitting it into two jobs with improved conditional logic, updated actions, and environment setup. Documentation for scaffolding Snakemake plugins now includes pixi installation and detailed stepwise instructions. The Snakedeploy CLI parser was enhanced with explicit help messages for subcommands, improving usability without changing logic or API signatures. Changes
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Actionable comments posted: 0
🔭 Outside diff range comments (1)
snakedeploy/client.py (1)
1-327: CI is red – runruff format.The pipeline fails with a Ruff formatting error.
Runruff format --write(or the project’s formatter target) before merging.
🧹 Nitpick comments (4)
snakedeploy/client.py (3)
64-66: Redundant description & help strings – keep one.
argparsealready shows the command description as part of--help; specifying the identical text again viahelp=duplicates output.
Prefer to leavedescription=only (or shorten one of them) to avoid verbose, repetitive help screens.-deploy_workflow_parser = subparsers.add_parser( - "deploy-workflow", description="Deploy a workflow from a git repository.", help="Deploy a workflow from a git repository." +deploy_workflow_parser = subparsers.add_parser( + "deploy-workflow", + description="Deploy a workflow from a git repository.", )
122-124: Spelling: “envrionments” → “environments”.Minor typo in the help text.
- help="Pin/lock given conda envrionments to compatible package URLs at the time of invocation.", + help="Pin/lock given conda environments to compatible package URLs at the time of invocation.",
218-220: Duplicated wording inhelp/description.Same issue as above – remove the duplicate to keep help concise.
-update_snakemake_wrappers = subparsers.add_parser( - "update-snakemake-wrappers", - help="Update all snakemake wrappers in given Snakefiles.", - description="Update all snakemake wrappers in given Snakefiles.", +update_snakemake_wrappers = subparsers.add_parser( + "update-snakemake-wrappers", + description="Update all snakemake wrappers in given Snakefiles.", ).github/workflows/release-please.yml (1)
38-38: Add trailing newline to satisfy YAML-lint.Static analysis flags the missing newline at EOF.
- password: ${{ secrets.PYPI_TOKEN }} + password: ${{ secrets.PYPI_TOKEN }} +
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📒 Files selected for processing (3)
.github/workflows/release-please.yml(1 hunks)docs/snakemake_developers/scaffold_snakemake_plugins.rst(1 hunks)snakedeploy/client.py(6 hunks)
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**/*.py
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Files:
snakedeploy/client.py
🪛 YAMLlint (1.37.1)
.github/workflows/release-please.yml
[error] 38-38: no new line character at the end of file
(new-line-at-end-of-file)
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snakedeploy/client.py
[error] 1-1: Ruff formatting check failed. File would be reformatted. Run 'ruff format --write' to fix code style issues.
🔇 Additional comments (1)
docs/snakemake_developers/scaffold_snakemake_plugins.rst (1)
8-18: Great clarification of pixi prerequisite.The extra context on
pixisetup will prevent user confusion. Nice!
🤖 I have created a release *beep* *boop* --- ## [0.12.1](v0.12.0...v0.12.1) (2025-07-25) ### Documentation * improved help and docs ([#91](#91)) ([80f9837](80f9837)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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