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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.7k 617

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 238 205

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 181 31

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    62 15

  5. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 45 41

  6. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 36 10

Repositories

Showing 10 of 63 repositories
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    Python 2,665 MIT 617 1,147 (1 issue needs help) 85 Updated Dec 23, 2025
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog’s past year of commit activity
    Python 36 MIT 10 2 0 Updated Dec 22, 2025
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers’s past year of commit activity
    Python 238 205 14 37 Updated Dec 19, 2025
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 45 MIT 41 42 10 Updated Dec 18, 2025
  • snakemake-github-action Public

    A Github action for running a Snakemake workflow

    snakemake/snakemake-github-action’s past year of commit activity
    62 MIT 15 4 1 Updated Dec 16, 2025
  • snakemake-executor-plugin-slurm-jobstep Public

    A Snakemake executor plugin for running srun jobs inside of SLURM jobs (meant for internal use by snakemake-executor-plugin-slurm)

    snakemake/snakemake-executor-plugin-slurm-jobstep’s past year of commit activity
    Python 0 MIT 5 0 0 Updated Dec 15, 2025
  • snakemake-hpc-teaching-material Public
    snakemake/snakemake-hpc-teaching-material’s past year of commit activity
    TeX 0 CC-BY-SA-4.0 2 2 0 Updated Dec 10, 2025
  • snakemake-interface-storage-plugins Public

    This package provides a stable interface for interactions between Snakemake and its storage plugins.

    snakemake/snakemake-interface-storage-plugins’s past year of commit activity
    Python 2 MIT 10 4 3 Updated Dec 1, 2025
  • mastodon-release-post-action Public

    GitHub action to facilitate posting release notes on Mastodon

    snakemake/mastodon-release-post-action’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Nov 30, 2025
  • snakedeploy Public

    deploy a snakemake pipeline directly from version control (under development)

    snakemake/snakedeploy’s past year of commit activity
    Python 24 MPL-2.0 13 14 5 Updated Nov 26, 2025
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