Repositories list

• leopard

  Public
  graphs for the LEOPARD study. They can be embedded in Adept dashboard

  0•0•0•0•Updated Sep 4, 2025Sep 4, 2025

• SBML.jl

  Public
  Julia interface to the Systems Biology Markup Language (SBML) library

  modelingsystems-biologycobra+ 2libsbmlsbml

  Julia

  •

  Apache License 2.0

  •12•30•4•0•Updated Sep 2, 2025Sep 2, 2025

• GigaSOM.jl

  Public
  Huge-scale, high-performance flow cytometry clustering in Julia

  clusteringsomartificial-intelligence+ 11neural-networksimmunologyself-organizing-maplarge-scalecytofflow-cytometrymass-cytometry+ 4

  Julia

  •

  Apache License 2.0

  •9•35•0•1•Updated Aug 28, 2025Aug 28, 2025

• clusterpainter

  Public
  simple metaclustering/annotation tool

  visualizationclustering

  Haskell

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 17, 2025Jun 17, 2025

• remotesom

  Public
  fast federated training of self-organizing maps with TLS-encrypted&authenticated traffic

  Haskell

  •

  Apache License 2.0

  •1•1•0•0•Updated Jun 10, 2025Jun 10, 2025

• cwl-example-workflows

  Public
  Example workflows written in CWL

  Common Workflow Language

  •

  Apache License 2.0

  •6•0•0•0•Updated May 5, 2025May 5, 2025

• COBREXA.jl

  Public
  Constraint-Based Reconstruction and EXascale Analysis

  hpchigh-performancejulia+ 4cobraexascaleconstraint-based-modelingexascale-analysis

  Julia

  •

  Apache License 2.0

  •8•44•7•0•Updated Oct 23, 2024Oct 23, 2024

• CuFluxSampler.jl

  Public
  GPU-accelerated algorithms for flux sampling in CUDA.jl

  gpujuliacuda+ 4samplingmetabolismcobrametabolic-network

  Julia

  •

  Apache License 2.0

  •0•1•1•1•Updated Jun 19, 2024Jun 19, 2024

• FBCModelTests.jl

  Public
  Tests for constraint-based metabolic models

  Julia

  •

  Apache License 2.0

  •5•6•7•2•Updated Feb 5, 2024Feb 5, 2024

• PikaParser.jl

  Public
  Pure Julia implementation of pika parser.

  juliaparser-library

  Julia

  •

  Apache License 2.0

  •2•54•1•0•Updated Oct 9, 2023Oct 9, 2023

• foreman

  Public
  an application that automates the lifecycle of servers

  Ruby

  •

  GNU General Public License v3.0

  •1k•0•0•0•Updated Aug 17, 2023Aug 17, 2023

• frog-specification

  Public
  TeX

  •

  Apache License 2.0

  •1•2•1•1•Updated Apr 26, 2023Apr 26, 2023

• GigaScatter.jl

  Public
  Fast rasterization of huge amounts of tiny transparent points (in Julia)

  Julia

  •

  Apache License 2.0

  •0•9•4•0•Updated Mar 23, 2023Mar 23, 2023

• sensitive-data-simulator

  Public
  (This repository contents is only temporary, the app is now under construction)

  HTML

  •0•0•0•0•Updated Mar 15, 2023Mar 15, 2023

• icons-mirror

  Public
  mirror of icons and emojis for publishing online slides

  CSS

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 2, 2023Mar 2, 2023

• basic-git-practice

  Public
  Basic git course - Practice repository

  gitjekyllbasic+ 3websitecoursepractice

  48•4•0•0•Updated Feb 21, 2023Feb 21, 2023

• VkComputeUtils.jl

  Public
  Convenience utilities for running compute shaders with Vulkan in Julia

  hpcgpujulia+ 2vulkangpu-computing

  Julia

  •

  Apache License 2.0

  •0•1•0•0•Updated Sep 30, 2022Sep 30, 2022

• DistributedData.jl

  Public
  Simple distributed data manipulation and processing routines in Julia

  datadistributedjulia

  Julia

  •

  Apache License 2.0

  •0•17•0•0•Updated Mar 22, 2022Mar 22, 2022

• gPAS

  Public
  A Generic Pseudonym Administration Service

  Java

  •

  GNU Affero General Public License v3.0

  •5•0•0•0•Updated May 12, 2021May 12, 2021

• Fractalis

  Public
  [Back-end] A scalable open-source service for platform-independent interactive visual analysis of biomedical data

  Python

  •

  Apache License 2.0

  •3•8•0•0•Updated Apr 20, 2021Apr 20, 2021

• roadmap

  Public
  DCC/UC3 collaboration for a data management planning tool

  Ruby

  •

  MIT License

  •115•0•0•0•Updated Mar 26, 2021Mar 26, 2021

• advanced-git-practice

  Public
  Practice repository advanced git training.

  9•1•0•0•Updated Mar 18, 2021Mar 18, 2021

• tagger

  Public
  C++

  •

  BSD 2-Clause "Simplified" License

  •9•0•0•0•Updated Sep 17, 2020Sep 17, 2020

• mamba

  Public
  Python

  •

  Other

  •1•0•0•0•Updated Sep 16, 2020Sep 16, 2020

• jekyll-paginate-v2

  Public
  Pagination Generator for Jekyll 3 (enhanced replacement for the old built-in jekyll-paginate gem) ⛺

  Ruby

  •

  MIT License

  •288•0•0•0•Updated Feb 8, 2020Feb 8, 2020

• Fractal.js

  Public
  [Front-end] A scalable open-source service for platform-independent interactive visual analysis of biomedical data

  Vue

  •

  Apache License 2.0

  •1•2•0•0•Updated Apr 12, 2019Apr 12, 2019

• Fractalis-Issues

  Public
  Public issue tracker for the entire Fractalis project

  0•0•16•0•Updated Jul 18, 2018Jul 18, 2018