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@molgenis

MOLGENIS - open source solutions for scientific data

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  1. molgenis-emx2 molgenis-emx2 Public

    MOLGENIS EMX2, the latest version of the MOLGENIS data platform.

    Vue 24 21

  2. molgenis-service-armadillo molgenis-service-armadillo Public

    Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite

    Java 9 10

  3. systemsgenetics systemsgenetics Public

    Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool

    Java 179 99

  4. vip vip Public

    Variant Interpretation Pipeline

    Shell 46 9

  5. molgenis molgenis Public

    MOLGENIS - for scientific data: management, exploration, integration and analysis.

    Java 121 96

Repositories

Showing 10 of 205 repositories
  • molgenis-emx2 Public

    MOLGENIS EMX2, the latest version of the MOLGENIS data platform.

    molgenis/molgenis-emx2’s past year of commit activity
    Vue 24 LGPL-3.0 21 259 (3 issues need help) 73 Updated Jan 29, 2026
  • vip Public

    Variant Interpretation Pipeline

    molgenis/vip’s past year of commit activity
    Shell 46 LGPL-3.0 9 5 10 Updated Jan 29, 2026
  • straglr-tsv2vcf Public

    Java tool to create a vcf from the straglr tsv output

    molgenis/straglr-tsv2vcf’s past year of commit activity
    Java 0 LGPL-3.0 0 0 0 Updated Jan 29, 2026
  • molgenis-service-armadillo Public

    Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite

    molgenis/molgenis-service-armadillo’s past year of commit activity
    Java 9 LGPL-3.0 10 79 (1 issue needs help) 15 Updated Jan 28, 2026
  • take-it-easyconfigs Public
    molgenis/take-it-easyconfigs’s past year of commit activity
    Perl 0 9 0 9 Updated Jan 28, 2026
  • ansible-pipelines Public
    molgenis/ansible-pipelines’s past year of commit activity
    Python 8 GPL-3.0 9 0 0 Updated Jan 28, 2026
  • STEMI-scRNA-seq Public

    single cell experiments in STEMI participants

    molgenis/STEMI-scRNA-seq’s past year of commit activity
    R 2 0 0 0 Updated Jan 27, 2026
  • vip-report-template Public

    Report template for Variant Call Format (VCF) Report generator

    molgenis/vip-report-template’s past year of commit activity
    TypeScript 4 LGPL-3.0 0 1 3 Updated Jan 27, 2026
  • depad-utils Public

    Utilities for deploy admins

    molgenis/depad-utils’s past year of commit activity
    R 0 GPL-3.0 4 0 0 Updated Jan 26, 2026
  • vip-report Public

    Report generator for Variant Call Format (VCF) files

    molgenis/vip-report’s past year of commit activity
    HTML 5 LGPL-3.0 1 0 1 Updated Jan 26, 2026
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