Fix 2583 #2724
Workflow file for this run
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| name: Commit continuous integration | |
| on: | |
| push: | |
| pull_request: | |
| branches: | |
| - master | |
| - develop | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| name: Build | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash | |
| timeout-minutes: 10 | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v5 | |
| - name: Setup Python | |
| uses: astral-sh/setup-uv@v6 | |
| with: | |
| enable-cache: false | |
| - name: Build package | |
| run: uv build | |
| - name: Check package | |
| run: uvx twine check --strict dist/* | |
| lint: | |
| name: Lint | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash | |
| timeout-minutes: 10 | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v5 | |
| - name: Setup Python | |
| uses: astral-sh/setup-uv@v6 | |
| with: | |
| enable-cache: false | |
| - name: Lint | |
| run: uvx ruff check | |
| - name: Check format | |
| run: uvx ruff format --check | |
| - name: Check spelling | |
| run: uvx codespell | |
| - name: Check CITATION.cff | |
| run: | | |
| uvx cffconvert --validate | |
| uvx cffconvert -f apalike | |
| uvx cffconvert -f bibtex | |
| smoke: | |
| name: Smoke test | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash | |
| timeout-minutes: 10 | |
| env: | |
| PYTHON_VERSION: '3.10' | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v5 | |
| - name: Setup Python | |
| uses: astral-sh/setup-uv@v6 | |
| with: | |
| cache-dependency-glob: "**/pyproject.toml" | |
| - name: Install Python dependencies | |
| # temp. allow prereleases for vtk on aarch64 | |
| run: uv sync --all-extras --prerelease=allow | |
| - name: Install Modflow executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Smoke test | |
| working-directory: autotest | |
| run: uv run pytest -v -n=auto --smoke --cov=flopy --cov-report=xml --durations=0 --keep-failed=.failed | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload failed test outputs | |
| uses: actions/upload-artifact@v4 | |
| if: failure() | |
| with: | |
| name: failed-smoke-${{ runner.os }}-${{ env.PYTHON_VERSION }} | |
| path: autotest/.failed/** | |
| - name: Upload coverage | |
| if: github.repository_owner == 'modflowpy' && (github.event_name == 'push' || github.event_name == 'pull_request') | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| files: autotest/coverage.xml | |
| test: | |
| name: Test | |
| needs: smoke | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, macos-latest, windows-latest ] | |
| python-version: [ "3.10", "3.11", "3.12" ] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| timeout-minutes: 60 | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v5 | |
| with: | |
| path: flopy | |
| - name: Checkout MODFLOW 6 | |
| uses: actions/checkout@v5 | |
| with: | |
| repository: MODFLOW-ORG/modflow6 | |
| path: modflow6 | |
| - name: Install Modflow-related executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Install triangle (macOS workaround) | |
| if: runner.os == 'macOS' | |
| uses: modflowpy/install-modflow-action@v1 | |
| with: | |
| repo: executables | |
| ostag: mac | |
| subset: triangle | |
| - name: Setup GNU Fortran | |
| uses: fortran-lang/setup-fortran@v1 | |
| with: | |
| compiler: gcc | |
| version: 13 | |
| - name: Setup pixi | |
| uses: prefix-dev/[email protected] | |
| with: | |
| pixi-version: v0.41.4 | |
| manifest-path: modflow6/pixi.toml | |
| - name: Install dependencies | |
| working-directory: modflow6 | |
| run: | | |
| pixi run install | |
| pixi run pip install coverage pytest-cov netcdf4 | |
| - name: Install FloPy | |
| working-directory: flopy | |
| run: | | |
| pixi run --manifest-path=../modflow6/pixi.toml pip install --no-deps -e . | |
| pixi run --manifest-path=../modflow6/pixi.toml python -m flopy.mf6.utils.generate_classes --dfnpath ../modflow6/doc/mf6io/mf6ivar/dfn | |
| - name: Build MF6 | |
| working-directory: modflow6 | |
| run: | | |
| pixi run meson setup builddir --buildtype=debugoptimized --prefix=$(pwd) --libdir=bin | |
| pixi run meson install -C builddir | |
| pixi run meson test --verbose --no-rebuild -C builddir | |
| - name: Run tests | |
| working-directory: flopy/autotest | |
| run: | | |
| pixi run --manifest-path=../../modflow6/pixi.toml pytest -v -m="not example" -n=auto --cov=flopy --cov-append --cov-report=xml --durations=0 --keep-failed=.failed --dist loadfile | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Report coverage | |
| working-directory: flopy/autotest | |
| run: pixi run --manifest-path=../../modflow6/pixi.toml coverage report | |
| - name: Upload failed test outputs | |
| uses: actions/upload-artifact@v4 | |
| if: failure() | |
| with: | |
| name: failed-${{ matrix.os }}-${{ matrix.python-version }} | |
| path: flopy/autotest/.failed/** | |
| - name: Upload coverage | |
| if: github.repository_owner == 'modflowpy' && (github.event_name == 'push' || github.event_name == 'pull_request') | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| files: flopy/autotest/coverage.xml |