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1. RSEM RSEM Public

   RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

   C++ 446 124

2. detonate detonate Public

   DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation

   C++ 13 4

3. MetaSRA-pipeline MetaSRA-pipeline Public

   MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

   Python 43 14

4. CellO CellO Public

   CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

   Jupyter Notebook 65 14