v0.1.12

[huangziwei]

Refactored warped-mesh handling and plotting, ensuring the warped plot3v shows both skeleton and mesh when available (possible now thanks to berenslab/pywarper#11 );

also, changed and clarified soma CLI options.

flatone SEG_ID --soma-init-guess [x|y|z] [min|max] --soma-threshold [0-100;default=99.9] --soma-distance-factor [float; default=4]

The default for soma config should work for most big cells with relatively big, well-shaped soma. For smaller cells such as bipolar cells, or cells with smaller size soma, try setting --soma-threshold to 90. For cells without soma, you can rerun with a different init-guess, which will act as a fallback soma when no soma is be detected:

flatone SEG_ID --soma-init-guess [x|y|z] [min|max] --overwrite-skeleton --overwrite-profile