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  1. polizzilab/LASErMPNN polizzilab/LASErMPNN Public

    All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing Model

    Python 13 6

  2. polizzilab/NISE polizzilab/NISE Public

    Neural Iterative Selection-Expansion using LASErMPNN and Boltz-2x

    Python 18 7

  3. CARPdock CARPdock Public

    Fast gpu-accelerated rigid-rigid docking onto protein backbones without a sequence.

    Jupyter Notebook 5

  4. boltz-generalized-covalent-modification boltz-generalized-covalent-modification Public

    Enables using Boltz-1/1x to predict the structure of arbitrary covalent modifications / Non-Canonical Amino Acids. Covalent bonds are enforced. Also walks you through injecting a new residue into t…

    Jupyter Notebook 12 4

  5. calc_symmetry_aware_rmsd.py calc_symmetry_aware_rmsd.py
    1
    import io
    2
    import os
    3
    from pathlib import Path
    4
    from rdkit import Chem
    5
    from rdkit.Chem import AllChem
  6. neovim-config neovim-config Public

    Neovim configuration featuring nerdtree, lightline, nerdcomments, autocompletion and snippets, catppuccin colorscheme, and sensible defaults

    Vim Script 1