Bug:

[anpanche]

Describe the bug
Hi @YoshitakaMo ,
I am trying to install localcolebfold on my Mac and I want to run rosetafold and alphafold using cpu.
I followed all the steps for Mac with silicon chip and succesfully installed colabfold_batch (according to the message I got). But when I am running the commenad for prediction it is giving the following error,

/Users/arcsan/Desktop/multimers/colabfold_batch/colabfold-conda/lib/python3.8/site-packages/jax/_src/lib/init.py:32: UserWarning: JAX on Mac ARM machines is experimental and minimally tested. Please see jax-ml/jax#5501 in the event of problems.
warnings.warn("JAX on Mac ARM machines is experimental and minimally tested. "
Traceback (most recent call last):
File "/Users/arcsan/Desktop/multimers/colabfold_batch/colabfold-conda/bin/colabfold_batch", line 5, in
from colabfold.batch import main
File "/Users/arcsan/Desktop/multimers/colabfold_batch/colabfold-conda/lib/python3.8/site-packages/colabfold/batch.py", line 25, in
from alphafold.notebooks.notebook_utils import get_pae_json
ModuleNotFoundError: No module named 'alphafold'

Please let me know how can I resolve this issues.
Thanks in advance.

[YanfeiAI]

It seems to be an installation problem.
The installation will not be canceled even If some steps failed. And the failed steps in the installation message is not obvious.
I recommend to remove the related directories, retry the installation and check the message carefully.
By the way, the title 'Bug:' is broad. 'ModuleNotFoundError: No module named 'alphafold'' is better.

[YoshitakaMo]

The bug has been fixed now. Please download the latest installer for M1 Mac and try again.

[anpanche]

Thanks. I will do the installation again and check.