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Reduce Verbosity #248

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Merged
merged 1 commit into from
Nov 9, 2023
Merged

Reduce Verbosity #248

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18 changes: 13 additions & 5 deletions sed/core/processor.py
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Original file line number Diff line number Diff line change
Expand Up @@ -65,6 +65,7 @@ def __init__(
folder: str = None,
runs: Sequence[str] = None,
collect_metadata: bool = False,
verbose: bool = False,
**kwds,
):
"""Processor class of sed. Contains wrapper functions defining a work flow
Expand Down Expand Up @@ -97,6 +98,8 @@ def __init__(
num_cores = N_CPU - 1
self._config["binning"]["num_cores"] = num_cores

self.verbose = verbose

self._dataframe: Union[pd.DataFrame, ddf.DataFrame] = None
self._timed_dataframe: Union[pd.DataFrame, ddf.DataFrame] = None
self._files: List[str] = []
Expand Down Expand Up @@ -666,7 +669,8 @@ def apply_momentum_correction(
if preview:
print(self._dataframe.head(10))
else:
print(self._dataframe)
if self.verbose:
print(self._dataframe)

# Momentum calibration work flow
# 1. Calculate momentum calibration
Expand Down Expand Up @@ -799,7 +803,8 @@ def apply_momentum_calibration(
if preview:
print(self._dataframe.head(10))
else:
print(self._dataframe)
if self.verbose:
print(self._dataframe)

# Energy correction workflow
# 1. Adjust the energy correction parameters
Expand Down Expand Up @@ -923,7 +928,8 @@ def apply_energy_correction(
if preview:
print(self._dataframe.head(10))
else:
print(self._dataframe)
if self.verbose:
print(self._dataframe)

# Energy calibrator workflow
# 1. Load and normalize data
Expand Down Expand Up @@ -1257,7 +1263,8 @@ def append_energy_axis(
if preview:
print(self._dataframe.head(10))
else:
print(self._dataframe)
if self.verbose:
print(self._dataframe)

def add_energy_offset(
self,
Expand Down Expand Up @@ -1451,7 +1458,8 @@ def calibrate_delay_axis(
if preview:
print(self._dataframe.head(10))
else:
print(self._dataframe)
if self.verbose:
print(self._dataframe)

def add_jitter(
self,
Expand Down