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OATML-Markslab

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  1. ProteinGym ProteinGym Public

    Official repository for the ProteinGym benchmarks

    HTML 334 44

  2. EVE EVE Public

    Forked from OATML/EVE

    Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.

    Python 177 39

  3. Tranception Tranception Public

    Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"

    Python 158 27

  4. ProteinNPT ProteinNPT Public

    Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"

    Python 115 13

  5. EVEscape EVEscape Public

    Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"

    Python 62 11

  6. Protriever Protriever Public

    Official repository for the Protriever paper

    8

Repositories

Showing 7 of 7 repositories
  • ProteinGym Public

    Official repository for the ProteinGym benchmarks

    OATML-Markslab/ProteinGym’s past year of commit activity
    HTML 334 MIT 44 6 0 Updated Jul 21, 2025
  • proteingym_website Public
    OATML-Markslab/proteingym_website’s past year of commit activity
    JavaScript 1 1 0 0 Updated Jun 14, 2025
  • Protriever Public

    Official repository for the Protriever paper

    OATML-Markslab/Protriever’s past year of commit activity
    8 0 2 0 Updated Jun 5, 2025
  • ProteinNPT Public

    Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"

    OATML-Markslab/ProteinNPT’s past year of commit activity
    Python 115 MIT 13 3 0 Updated Mar 15, 2025
  • EVE Public Forked from OATML/EVE

    Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.

    OATML-Markslab/EVE’s past year of commit activity
    Python 177 MIT 58 0 3 Updated Mar 16, 2024
  • EVEscape Public

    Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"

    OATML-Markslab/EVEscape’s past year of commit activity
    Python 62 MIT 11 3 1 Updated Oct 11, 2023
  • Tranception Public

    Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"

    OATML-Markslab/Tranception’s past year of commit activity
    Python 158 MIT 27 5 1 Updated Aug 24, 2023

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