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Automatic update generated by nixpkgs-update tools. This update was made based on information from passthru.updateScript.

meta.description for python3Packages.nibabel is: Access a multitude of neuroimaging data formats

meta.homepage for python3Packages.nibabel is: https://nipy.org/nibabel

meta.changelog for python3Packages.nibabel is: https://github.com/nipy/nibabel/blob/5.3.3/Changelog

Updates performed
  • Ran passthru.UpdateScript
To inspect upstream changes
Impact

Checks done


  • built on NixOS
  • The tests defined in passthru.tests, if any, passed
  • found 5.3.3 with grep in /nix/store/xb4ybznrr4ma7dndgirmf2sqfk0afzrl-python3.13-nibabel-5.3.3
  • found 5.3.3 in filename of file in /nix/store/xb4ybznrr4ma7dndgirmf2sqfk0afzrl-python3.13-nibabel-5.3.3

Rebuild report (if merged into master) (click to expand)
41 total rebuild path(s)

41 package rebuild(s)

First fifty rebuilds by attrpath

intensity-normalization
pkgsRocm.python3Packages.dicom2nifti
pkgsRocm.python3Packages.pymedio
pkgsRocm.python3Packages.torchio
python312Packages.dcmstack
python312Packages.dicom2nifti
python312Packages.dipy
python312Packages.fslpy
python312Packages.heudiconv
python312Packages.intensity-normalization
python312Packages.nibabel
python312Packages.nilearn
python312Packages.nipy
python312Packages.nipype
python312Packages.nitime
python312Packages.nitransforms
python312Packages.niworkflows
python312Packages.pybids
python312Packages.pymedio
python312Packages.templateflow
python312Packages.torchio
python312Packages.trx-python
python313Packages.dcmstack
python313Packages.dicom2nifti
python313Packages.dipy
python313Packages.fslpy
python313Packages.heudiconv
python313Packages.intensity-normalization
python313Packages.nibabel
python313Packages.nilearn
python313Packages.nipy
python313Packages.nipype
python313Packages.nitime
python313Packages.nitransforms
python313Packages.niworkflows
python313Packages.pybids
python313Packages.pymedio
python313Packages.templateflow
python313Packages.torchio
python313Packages.trx-python
Instructions to test this update (click to expand)

Either download from the cache:

nix-store -r /nix/store/xb4ybznrr4ma7dndgirmf2sqfk0afzrl-python3.13-nibabel-5.3.3 \
  --option binary-caches 'https://cache.nixos.org/ https://nixpkgs-update-cache.nix-community.org/' \
  --option trusted-public-keys '
  nixpkgs-update-cache.nix-community.org-1:U8d6wiQecHUPJFSqHN9GSSmNkmdiFW7GW7WNAnHW0SM=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(The nixpkgs-update cache is only trusted for this store-path realization.)
For the cached download to work, your user must be in the trusted-users list or you can use sudo since root is effectively trusted.

Or, build yourself:

nix-build -A python3Packages.nibabel https://github.com/r-ryantm/nixpkgs/archive/c947c3803a8772ed6395f8a3643e33e0baea71af.tar.gz

Or:

nix build github:r-ryantm/nixpkgs/c947c3803a8772ed6395f8a3643e33e0baea71af#python3Packages.nibabel

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/xb4ybznrr4ma7dndgirmf2sqfk0afzrl-python3.13-nibabel-5.3.3
ls -la /nix/store/xb4ybznrr4ma7dndgirmf2sqfk0afzrl-python3.13-nibabel-5.3.3/bin


Pre-merge build results

We have automatically built all packages that will get rebuilt due to
this change.

This gives evidence on whether the upgrade will break dependent packages.
Note sometimes packages show up as failed to build independent of the
change, simply because they are already broken on the target branch.

nixpkgs-review result

Generated using nixpkgs-review.

Command: nixpkgs-review --extra-nixpkgs-config '{ allowBroken = false; }'
Commit: c947c3803a8772ed6395f8a3643e33e0baea71af


x86_64-linux

✅ 72 packages built:
  • intensity-normalization (python313Packages.intensity-normalization)
  • intensity-normalization.dist (python313Packages.intensity-normalization.dist)
  • python312Packages.dcmstack
  • python312Packages.dcmstack.dist
  • python312Packages.dicom2nifti
  • python312Packages.dicom2nifti.dist
  • python312Packages.dipy
  • python312Packages.dipy.dist
  • python312Packages.fslpy
  • python312Packages.fslpy.dist
  • python312Packages.heudiconv
  • python312Packages.heudiconv.dist
  • python312Packages.intensity-normalization
  • python312Packages.intensity-normalization.dist
  • python312Packages.nibabel
  • python312Packages.nibabel.dist
  • python312Packages.nilearn
  • python312Packages.nilearn.dist
  • python312Packages.nipy
  • python312Packages.nipy.dist
  • python312Packages.nipype
  • python312Packages.nipype.dist
  • python312Packages.nitime
  • python312Packages.nitime.dist
  • python312Packages.nitransforms
  • python312Packages.nitransforms.dist
  • python312Packages.niworkflows
  • python312Packages.niworkflows.dist
  • python312Packages.pybids
  • python312Packages.pybids.dist
  • python312Packages.pymedio
  • python312Packages.pymedio.dist
  • python312Packages.templateflow
  • python312Packages.templateflow.dist
  • python312Packages.torchio
  • python312Packages.torchio.dist
  • python312Packages.trx-python
  • python312Packages.trx-python.dist
  • python313Packages.dcmstack
  • python313Packages.dcmstack.dist
  • python313Packages.dicom2nifti
  • python313Packages.dicom2nifti.dist
  • python313Packages.dipy
  • python313Packages.dipy.dist
  • python313Packages.fslpy
  • python313Packages.fslpy.dist
  • python313Packages.heudiconv
  • python313Packages.heudiconv.dist
  • python313Packages.nibabel
  • python313Packages.nibabel.dist
  • python313Packages.nilearn
  • python313Packages.nilearn.dist
  • python313Packages.nipy
  • python313Packages.nipy.dist
  • python313Packages.nipype
  • python313Packages.nipype.dist
  • python313Packages.nitime
  • python313Packages.nitime.dist
  • python313Packages.nitransforms
  • python313Packages.nitransforms.dist
  • python313Packages.niworkflows
  • python313Packages.niworkflows.dist
  • python313Packages.pybids
  • python313Packages.pybids.dist
  • python313Packages.pymedio
  • python313Packages.pymedio.dist
  • python313Packages.templateflow
  • python313Packages.templateflow.dist
  • python313Packages.torchio
  • python313Packages.torchio.dist
  • python313Packages.trx-python
  • python313Packages.trx-python.dist

Maintainer pings

cc @ashgillman for testing.

Tip

As a maintainer, if your package is located under pkgs/by-name/*, you can comment @NixOS/nixpkgs-merge-bot merge to automatically merge this update using the nixpkgs-merge-bot.


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@nixpkgs-ci nixpkgs-ci bot requested a review from ashgillman December 12, 2025 05:37
@nixpkgs-ci nixpkgs-ci bot added 10.rebuild-linux: 11-100 This PR causes between 11 and 100 packages to rebuild on Linux. 10.rebuild-darwin: 0 This PR does not cause any packages to rebuild on Darwin. 6.topic: python Python is a high-level, general-purpose programming language. labels Dec 12, 2025
@fabaff fabaff force-pushed the auto-update/python3Packages.nibabel branch from 35a994c to 97bb358 Compare December 12, 2025 08:12
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fabaff commented Dec 12, 2025

nixpkgs-review result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 470069
Commit: 97bb3586fdd085184efd0d2cf65a757cd089b51f


x86_64-linux

✅ 72 packages built:
  • intensity-normalization (python313Packages.intensity-normalization)
  • intensity-normalization.dist (python313Packages.intensity-normalization.dist)
  • python312Packages.dcmstack
  • python312Packages.dcmstack.dist
  • python312Packages.dicom2nifti
  • python312Packages.dicom2nifti.dist
  • python312Packages.dipy
  • python312Packages.dipy.dist
  • python312Packages.fslpy
  • python312Packages.fslpy.dist
  • python312Packages.heudiconv
  • python312Packages.heudiconv.dist
  • python312Packages.intensity-normalization
  • python312Packages.intensity-normalization.dist
  • python312Packages.nibabel
  • python312Packages.nibabel.dist
  • python312Packages.nilearn
  • python312Packages.nilearn.dist
  • python312Packages.nipy
  • python312Packages.nipy.dist
  • python312Packages.nipype
  • python312Packages.nipype.dist
  • python312Packages.nitime
  • python312Packages.nitime.dist
  • python312Packages.nitransforms
  • python312Packages.nitransforms.dist
  • python312Packages.niworkflows
  • python312Packages.niworkflows.dist
  • python312Packages.pybids
  • python312Packages.pybids.dist
  • python312Packages.pymedio
  • python312Packages.pymedio.dist
  • python312Packages.templateflow
  • python312Packages.templateflow.dist
  • python312Packages.torchio
  • python312Packages.torchio.dist
  • python312Packages.trx-python
  • python312Packages.trx-python.dist
  • python313Packages.dcmstack
  • python313Packages.dcmstack.dist
  • python313Packages.dicom2nifti
  • python313Packages.dicom2nifti.dist
  • python313Packages.dipy
  • python313Packages.dipy.dist
  • python313Packages.fslpy
  • python313Packages.fslpy.dist
  • python313Packages.heudiconv
  • python313Packages.heudiconv.dist
  • python313Packages.nibabel
  • python313Packages.nibabel.dist
  • python313Packages.nilearn
  • python313Packages.nilearn.dist
  • python313Packages.nipy
  • python313Packages.nipy.dist
  • python313Packages.nipype
  • python313Packages.nipype.dist
  • python313Packages.nitime
  • python313Packages.nitime.dist
  • python313Packages.nitransforms
  • python313Packages.nitransforms.dist
  • python313Packages.niworkflows
  • python313Packages.niworkflows.dist
  • python313Packages.pybids
  • python313Packages.pybids.dist
  • python313Packages.pymedio
  • python313Packages.pymedio.dist
  • python313Packages.templateflow
  • python313Packages.templateflow.dist
  • python313Packages.torchio
  • python313Packages.torchio.dist
  • python313Packages.trx-python
  • python313Packages.trx-python.dist

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Change looks good to me.

@fabaff fabaff added this pull request to the merge queue Dec 12, 2025
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Labels

6.topic: python Python is a high-level, general-purpose programming language. 10.rebuild-darwin: 0 This PR does not cause any packages to rebuild on Darwin. 10.rebuild-linux: 11-100 This PR causes between 11 and 100 packages to rebuild on Linux.

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2 participants