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Fix bugs in ONT couchdb connections #437

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Merged
aanil merged 1 commit into from
Nov 6, 2025
Merged

Fix bugs in ONT couchdb connections #437

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4 changes: 4 additions & 0 deletions VERSIONLOG.md
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Original file line number Diff line number Diff line change
@@ -1,5 +1,9 @@
# Scilifelab_epps Version Log

## 20251105.1

Fix bugs in ONT couchdb connections

## 20251104.1

Update EPP for generating ONT samplesheets so that periods in the kitname are replaced by dashes.
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2 changes: 1 addition & 1 deletion scripts/ont_send_reloading_info_to_db.py
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Expand Up @@ -173,7 +173,7 @@ def get_ONT_db() -> tuple[cloudant_v1.CloudantV1, str]:
config["statusdb"].get("username"), config["statusdb"].get("password")
)
)
cloudant.set_service_url(config["statusdb"].get("url"))
cloudant.set_service_url(f"https://{config['statusdb'].get('url')}")

return (cloudant, "nanopore_runs")

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2 changes: 1 addition & 1 deletion scripts/ont_sync_to_db.py
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Expand Up @@ -187,7 +187,7 @@ def write_to_doc(
doc["lims"]["loading"] = []
doc["lims"]["loading"].append(dict_to_add)

client.put_document(db=db, doc_id=doc["id"], document=doc).get_result()
client.put_document(db=db, doc_id=doc["_id"], document=doc).get_result()


def sync_runs_to_db(process: Process, args: Namespace, lims: Lims):
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