More info: https://mcpmed.org
Heads-up: We’re still setting up—only this README is public for now. Watch or star the org to get notified when the code and registry go live.
MCPmed will make biomedical data services—APIs, databases, archives, and -omics portals—LLM-ready using the Model Context Protocol (MCP).
Find the template here. Ideally, you can use the template to create a new MCPmed package to wrap an existing API.
cookiecutter MCPmedtemplate- Accelerate translational science – expose curated clinical and molecular datasets through self-describing MCP manifests so agents can query datasets, cohorts, or biomarkers programmatically.
- Lower adoption barriers – ship MIT-licensed templates
@misc{flotho2025mcpmedmcpenabledbioinformaticsweb,
title={MCPmed: A Call for MCP-Enabled Bioinformatics Web Services for LLM-Driven Discovery},
author={Matthias Flotho and Ian Ferenc Diks and Philipp Flotho and Leidy-Alejandra G. Molano and Pascal Hirsch and Andreas Keller},
year={2025},
eprint={2507.08055},
archivePrefix={arXiv},
primaryClass={q-bio.OT},
url={https://arxiv.org/abs/2507.08055},
}
