Release v0.1.1 alpha 5

What's Changed

• Feature/abiotic tools by @vgro in #340
• Feature/wind profiles by @vgro in #350
• Feature/energy balance init by @vgro in #357
• Feature/initialise for first timestep by @vgro in #362
• Feature/soil absorption by @vgro in #377
• Adding new BaseModel structure into the abiotic model. by @davidorme in #382
• Feature/use abiotic tools by @vgro in #386
• Publish version 0.1.0a0 by @davidorme in #401
• Fixing up PyPI issues in 0.1.0a0 by @davidorme in #404
• Feature/calculate conductivities by @vgro in #406
• Set up new trusted publication workflow by @davidorme in #408
• np.mean error fixed by @vgro in #414
• Feature/animal module - The Madingley Foraging Update by @TaranRallings in #410
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #409
• Feature - Feeding Animals into Data by @TaranRallings in #415
• Soil moisture units to mm in data object by @vgro in #420
• Feature/revised wind model by @vgro in #418
• Feature/juvenile dispersal - Adding juvenile dispersal to the Animal Module by @TaranRallings in #419
• Adding non-predation mortality and semelparity to the Animal Module. by @TaranRallings in #422
• Feature/add radiation input by @vgro in #423
• Feature/test ragged arrays by @vgro in #424
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #417
• Add the demo run to the website pages by @davidorme in #428
• Simplify the jupyter kernelspec setup by @davidorme in #429
• Feature/fixes for variables pr by @vgro in #430
• Update QA tool chain and add Python 3.12 by @davidorme in #433
• 434 soil temperature not returned correctly by @vgro in #435
• Rename 'animals' model to 'animal' by @davidorme in #439
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #440
• Variables 1 vgro by @vgro in #431
• Fixing Hydrology model to work with LayerStructure by @davidorme in #445
• LayerStructure updates for abiotic_simple by @davidorme in #448
• Indirect development in animals by @TaranRallings in #450
• Initial draft of abiotic model changes for new LayerStructure by @davidorme in #449
• Amending vertical layer structure by @davidorme in #441
• Update PULL_REQUEST_TEMPLATE.md by @vgro in #456
• Turning on single-threaded handling in dask by @davidorme in #457
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #443
• Add more functionality into LayerStructure. by @davidorme in #452
• Revised animal excretion by @TaranRallings in #460
• Setup for the documentation review by @davidorme in #455
• Updated TODOs across animal module code. by @TaranRallings in #475
• abiotic and hydrology models overview updated by @vgro in #476
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #478
• Adopt extended LayerStructure functionality by @davidorme in #459
• Adding a microbial necromass pool by @jacobcook1995 in #477
• Removed a handful of now defunct constants and methods. by @TaranRallings in #482
• Update ve theory by @vgro in #481
• Updating to numpy 2.0.0 by @davidorme in #454
• Animal model description in module_overview.md by @TaranRallings in #497
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #503
• Landing page links by @davidorme in #502
• Add abiotic documentation by @vgro in #500
• reference links added by @vgro in #505
• Update contributor docs by @davidorme in #499
• 507 add more theory to the theory by @vgro in #508
• 506 implementation of abiotic simple model docs by @vgro in #515
• Add variables setup by @dalonsoa in #388
• Direct input from plant model to the litter model by @jacobcook1995 in #509
• Review the implementation section of the docs by @davidorme in #516
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #520
• 519 review abiotic simple and hydrology docstrings to match updated documentation by @vgro in #521
• 490 hydrology docs on implementation by @vgro in #518
• abiotic model preliminary implementation by @vgro in #523
• climate recipes deleted and note on pre-processing in implementation by @vgro in #526
• 532 litter model should average abiotic quantities over relevant soil layers by @jacobcook1995 in #534
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #527
• Added tracking of litter nitrogen by @jacobcook1995 in #531
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #537
• Move setup step to init in Abiotic and AbioticSimple models by @dalonsoa in #524
• Release branch 0.1.1a5 by @jacobcook1995 in #550

Full Changelog: test_publish2...v0.1.1a5