init setup script

Author: lazyoracle

setup.sh

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+echo "Update the package list..."
+sudo apt update
+echo "Upgrade installed packages..."
+sudo apt upgrade -y
+echo "Install necessary packages to minimal Ubuntu system..."
+sudo apt install -y fish wget bzip2 curl git gcc g++ python3-dev build-essential vim nano rsync
+sudo apt clean
+sudo apt autoremove -y
+echo "Install miniconda..."
+wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda.sh
+chmod +x miniconda.sh
+./miniconda.sh -b -p $HOME/miniconda3
+echo "Init bash for miniconda..."
+echo ". $HOME/miniconda3/etc/profile.d/conda.sh" >> ~/.profile
+source ~/.profile
+conda init bash
+source ~/.profile
+rm miniconda.sh
+echo "Create conda environment for Deep Learning..."
+echo "name: wildfire-dl
+channels:
+  - pytorch
+  - anaconda
+  - conda-forge
+  - defaults
+dependencies:
+  - black=19.10b0
+  - cudatoolkit=10.2.89
+  - flake8=3.8.3
+  - h5netcdf=0.8.1
+  - imbalanced-learn=0.7.0
+  - ipython=7.13.0
+  - jupyter=1.0.0
+  - jupyterlab=2.1.5
+  - matplotlib=3.2.2
+  - notebook=6.0.3
+  - numpy=1.18.1
+  - pandas=1.0.3
+  - pip=20.0.2
+  - plac=0.9.6
+  - pre-commit=2.5.1
+  - python=3.7.7
+  - pytorch=1.6.0
+  - regionmask=0.5.0
+  - scikit-image=0.16.2
+  - scipy=1.4.1
+  - sphinx=3.1.1
+  - tensorboard=2.2.2
+  - torchvision=0.7.0
+  - pip:
+    - gsutil==4.52
+    - netcdf4==1.5.3
+    - pytorch-lightning==0.9.0
+    - sphinx-autoapi==1.4.0
+    - wandb==0.8.36" >> ~/environment.yml
+conda env create --file environment.yml
+echo "Clean up conda..."
+conda clean -a -y
+rm environment.yml
+echo "Downloading FWI Forcings to ~/data/fwi-forcings/..."
+mkdir data
+conda activate wildfire-dl 
+cd data
+mkdir fwi-forcings
+gsutil -m cp gs://deepfwi-forcings/*201904* fwi-forcings/
+gsutil -m cp gs://deepfwi-forcings/*201905* fwi-forcings/
+gsutil -m cp gs://deepfwi-forcings/*201906* fwi-forcings/
+gsutil -m cp gs://deepfwi-forcings/*201907* fwi-forcings/
+gsutil -m cp gs://deepfwi-forcings/*201908* fwi-forcings/
+gsutil -m cp gs://deepfwi-forcings/*201909* fwi-forcings/
+echo "Rebooting system. Please login again after some time..."
+sleep 5; sudo reboot -h now