Merge pull request #116 from usegalaxy-eu/checklist_update

Automatic update of ENA Sample Checklists

Author: bgruening

ena_upload/templates/ENA_template_samples_ERC000011.xml

@@ -81,16 +81,16 @@ def mandatorytest(row, column, index):
                 <VALUE>${row['collected_by']}</VALUE>
             </SAMPLE_ATTRIBUTE>
             </py:if>
-            <py:if test="mandatorytest(row, 'collection date', index)">
+            <py:if test="mandatorytest(row, 'collection_date', index)">
             <SAMPLE_ATTRIBUTE>
-                <TAG>collection date</TAG>
-                <VALUE>${row['collection date']}</VALUE>
+                <TAG>collection_date</TAG>
+                <VALUE>${row['collection_date']}</VALUE>
             </SAMPLE_ATTRIBUTE>
             </py:if>
-            <py:if test="attributetest(row, 'geographic location (region and locality)')">
+            <py:if test="attributetest(row, 'geographic_location_region_and_locality')">
             <SAMPLE_ATTRIBUTE>
-                <TAG>geographic location (region and locality)</TAG>
-                <VALUE>${row['geographic location (region and locality)']}</VALUE>
+                <TAG>geographic_location_region_and_locality</TAG>
+                <VALUE>${row['geographic_location_region_and_locality']}</VALUE>
             </SAMPLE_ATTRIBUTE>
             </py:if>
             <py:if test="attributetest(row, 'identified_by')">
@@ -117,10 +117,10 @@ def mandatorytest(row, column, index):
                 <VALUE>${row['sex']}</VALUE>
             </SAMPLE_ATTRIBUTE>
             </py:if>
-            <py:if test="mandatorytest(row, 'geographic location (country and/or sea)', index)">
+            <py:if test="mandatorytest(row, 'geographic_location_country_andor_sea', index)">
             <SAMPLE_ATTRIBUTE>
-                <TAG>geographic location (country and/or sea)</TAG>
-                <VALUE>${row['geographic location (country and/or sea)']}</VALUE>
+                <TAG>geographic_location_country_andor_sea</TAG>
+                <VALUE>${row['geographic_location_country_andor_sea']}</VALUE>
             </SAMPLE_ATTRIBUTE>
             </py:if>
             <py:if test="attributetest(row, 'lab_host')">
@@ -129,10 +129,10 @@ def mandatorytest(row, column, index):
                 <VALUE>${row['lab_host']}</VALUE>
             </SAMPLE_ATTRIBUTE>
             </py:if>
-            <py:if test="attributetest(row, 'host scientific name')">
+            <py:if test="attributetest(row, 'host_scientific_name')">
             <SAMPLE_ATTRIBUTE>
-                <TAG>host scientific name</TAG>
-                <VALUE>${row['host scientific name']}</VALUE>
+                <TAG>host_scientific_name</TAG>
+                <VALUE>${row['host_scientific_name']}</VALUE>
             </SAMPLE_ATTRIBUTE>
             </py:if>
             <py:if test="attributetest(row, 'bio_material')">