Change default parameters for simulate-batch.R

Author: perej1

README.md

@@ -52,7 +52,7 @@ Run the script `simulate-batch.R` with desired arguments. For example, below we
 run simulations as a whole.
 
 ```
-Rscript simulate-batch.R --simulate TRUE --summarise TRUE --clover TRUE
+Rscript simulate-batch.R
 ```
 
 For example, if you want to exclude clover example, just run the following.

simulate-batch.R

@@ -2,9 +2,9 @@
 library(optparse)
 
 option_list <- list(
-  make_option("--simulate", type = "logical", default = FALSE,
+  make_option("--simulate", type = "logical", default = TRUE,
               help = "Simulate or not"),
-  make_option("--summarise", type = "logical", default = FALSE,
+  make_option("--summarise", type = "logical", default = TRUE,
               help = "Summarise or not"),
   make_option("--clover", type = "logical", default = TRUE,
               help = "Generate clover example or not")