v0.24.3

kallisto

• Update to 0.46.1.

--info

• Updated information on indrop versions

v0.24.2

count

• fix bug with --filter where it would produce the same matrix as unfiltered

v0.24.1

ref

• kb now provides a pre-built human index for RNA velocity (linnarsson)
• The intronic fasta with the --lamanno option now includes 30-base flanking regions.

count

• Unfiltered count matrices will always be placed in the counts_unfiltered folder.
• If the --filter option is specified, the filtered count matrices will be placed in the counts_filtered folder.

v0.24.0

Official release.

v0.2.1

count

• -o is now optional. Defaults to current directory.

Documentation

• Developer docs hosted on Read the Docs.

v0.2.0

Official PyPi release.

v0.1.4

count

• New --filter option. This option generates a filtered count matrix. It can not be used with --lamanno. Currently, this option only supports filtering with bustools.

v0.1.3

Fix for python 3.6

v0.1.2

info

• Updated information (now includes examples and citations)

v0.1.1

kb

• New --list option to display supported single-cell technologies
• Updated help messages and print statements overall

ref

• Can download prebuilt indices (but not for --lamanno)

count

• Support for --loom and --h5ad with --lamanno