sync all

Author: church89

.github/workflows/ci.yml

@@ -81,6 +81,11 @@ jobs:
       RDMAV_FORK_SAFE: 1
 
     steps:
+      - name: Setup cmake
+        uses: jwlawson/actions-setup-cmake@v2
+        with:
+          cmake-version: '3.31'
+
       - name: Checkout repository
         uses: actions/checkout@v4
         with:

CITATION.cff

@@ -0,0 +1,34 @@
+preferred-citation:
+  authors:
+  - family-names: Romano
+    given-names: Paul K.
+    orcid: "https://orcid.org/0000-0002-1147-045X"
+  - final-names: Horelik
+    given-names: Nicholas E.
+  - family-names: Herman
+    given-names: Bryan R.
+  - family-names: Nelson
+    given-names: Adam G.
+    orcid: "https://orcid.org/0000-0002-3614-0676"
+  - family-names: Forget
+    given-names: Benoit
+    orcid: "https://orcid.org/0000-0003-1459-7672"
+  - family-names: Smith
+    given-names: Kord
+  contact:
+  - family-names: Romano
+    given-names: Paul K.
+    orcid: "https://orcid.org/0000-0002-1147-045X"
+  doi: 10.1016/j.anucene.2014.07.048
+  issn: 0306-4549
+  volume: 82
+  journal: Annals of Nuclear Energy
+  publisher:
+    name: Elsevier
+  start: 90
+  end: 97
+  year: 2015
+  month: 8
+  title: "OpenMC: A state-of-the-art Monte Carlo code for research and development"
+  type: article
+  url: "https://doi.org/10.1016/j.anucene.2014.07.048"

CMakeLists.txt

@@ -36,8 +36,8 @@ option(OPENMC_ENABLE_COVERAGE "Compile with coverage analysis flags"
 option(OPENMC_USE_DAGMC       "Enable support for DAGMC (CAD) geometry"              OFF)
 option(OPENMC_USE_LIBMESH     "Enable support for libMesh unstructured mesh tallies" OFF)
 option(OPENMC_USE_MPI         "Enable MPI"                                           OFF)
-option(OPENMC_USE_MCPL        "Enable MCPL"                                          OFF)
 option(OPENMC_USE_UWUW        "Enable UWUW"                                          OFF)
+option(OPENMC_FORCE_VENDORED_LIBS "Explicitly use submodules defined in 'vendor'"    OFF)
 
 message(STATUS "OPENMC_USE_OPENMP ${OPENMC_USE_OPENMP}")
 message(STATUS "OPENMC_BUILD_TESTS ${OPENMC_BUILD_TESTS}")
@@ -46,8 +46,8 @@ message(STATUS "OPENMC_ENABLE_COVERAGE ${OPENMC_ENABLE_COVERAGE}")
 message(STATUS "OPENMC_USE_DAGMC ${OPENMC_USE_DAGMC}")
 message(STATUS "OPENMC_USE_LIBMESH ${OPENMC_USE_LIBMESH}")
 message(STATUS "OPENMC_USE_MPI ${OPENMC_USE_MPI}")
-message(STATUS "OPENMC_USE_MCPL ${OPENMC_USE_MCPL}")
 message(STATUS "OPENMC_USE_UWUW ${OPENMC_USE_UWUW}")
+message(STATUS "OPENMC_FORCE_VENDORED_LIBS ${OPENMC_FORCE_VENDORED_LIBS}")
 
 # Warnings for deprecated options
 foreach(OLD_OPT IN ITEMS "openmp" "profile" "coverage" "dagmc" "libmesh")
@@ -189,15 +189,6 @@ if(${HDF5_VERSION} VERSION_GREATER_EQUAL 1.12.0)
   list(APPEND cxxflags -DH5Oget_info_by_idx_vers=1 -DH5O_info_t_vers=1)
 endif()
 
-#===============================================================================
-# MCPL
-#===============================================================================
-
-if (OPENMC_USE_MCPL)
-  find_package(MCPL REQUIRED)
-  message(STATUS "Found MCPL: ${MCPL_DIR} (found version \"${MCPL_VERSION}\")")
-endif()
-
 #===============================================================================
 # Set compile/link flags based on which compiler is being used
 #===============================================================================
@@ -249,41 +240,61 @@ endif()
 # pugixml library
 #===============================================================================
 
-find_package_write_status(pugixml)
-if (NOT pugixml_FOUND)
+if(OPENMC_FORCE_VENDORED_LIBS)
   add_subdirectory(vendor/pugixml)
   set_target_properties(pugixml PROPERTIES CXX_STANDARD 14 CXX_EXTENSIONS OFF)
+else()
+  find_package_write_status(pugixml)
+  if (NOT pugixml_FOUND)
+    add_subdirectory(vendor/pugixml)
+    set_target_properties(pugixml PROPERTIES CXX_STANDARD 14 CXX_EXTENSIONS OFF)
+  endif()
 endif()
 
 #===============================================================================
 # {fmt} library
 #===============================================================================
 
-find_package_write_status(fmt)
-if (NOT fmt_FOUND)
+if(OPENMC_FORCE_VENDORED_LIBS)
   set(FMT_INSTALL ON CACHE BOOL "Generate the install target.")
   add_subdirectory(vendor/fmt)
+else()
+  find_package_write_status(fmt)
+  if (NOT fmt_FOUND)
+    set(FMT_INSTALL ON CACHE BOOL "Generate the install target.")
+    add_subdirectory(vendor/fmt)
+  endif()
 endif()
 
 #===============================================================================
 # xtensor header-only library
 #===============================================================================
 
-find_package_write_status(xtensor)
-if (NOT xtensor_FOUND)
+if(OPENMC_FORCE_VENDORED_LIBS)
   add_subdirectory(vendor/xtl)
   set(xtl_DIR ${CMAKE_CURRENT_BINARY_DIR}/vendor/xtl)
   add_subdirectory(vendor/xtensor)
+else()
+  find_package_write_status(xtensor)
+  if (NOT xtensor_FOUND)
+    add_subdirectory(vendor/xtl)
+    set(xtl_DIR ${CMAKE_CURRENT_BINARY_DIR}/vendor/xtl)
+    add_subdirectory(vendor/xtensor)
+  endif()
 endif()
 
 #===============================================================================
 # Catch2 library
 #===============================================================================
 
 if(OPENMC_BUILD_TESTS)
-  find_package_write_status(Catch2)
-  if (NOT Catch2_FOUND)
+  if (OPENMC_FORCE_VENDORED_LIBS)
     add_subdirectory(vendor/Catch2)
+  else()
+    find_package_write_status(Catch2)
+    if (NOT Catch2_FOUND)
+      add_subdirectory(vendor/Catch2)
+    endif()
   endif()
 endif()
 
@@ -343,6 +354,7 @@ list(APPEND libopenmc_SOURCES
   src/geometry.cpp
   src/geometry_aux.cpp
   src/hdf5_interface.cpp
+  src/ifp.cpp
   src/initialize.cpp
   src/lattice.cpp
   src/material.cpp
@@ -406,6 +418,7 @@ list(APPEND libopenmc_SOURCES
   src/tallies/filter_materialfrom.cpp
   src/tallies/filter_mesh.cpp
   src/tallies/filter_meshborn.cpp
+  src/tallies/filter_meshmaterial.cpp
   src/tallies/filter_meshsurface.cpp
   src/tallies/filter_mu.cpp
   src/tallies/filter_musurface.cpp
@@ -417,6 +430,7 @@ list(APPEND libopenmc_SOURCES
   src/tallies/filter_surface.cpp
   src/tallies/filter_time.cpp
   src/tallies/filter_universe.cpp
+  src/tallies/filter_weight.cpp
   src/tallies/filter_zernike.cpp
   src/tallies/tally.cpp
   src/tallies/tally_scoring.cpp
@@ -489,11 +503,11 @@ else()
 endif()
 
 if(OPENMC_USE_DAGMC)
-  target_compile_definitions(libopenmc PRIVATE DAGMC)
+  target_compile_definitions(libopenmc PRIVATE OPENMC_DAGMC_ENABLED)
   target_link_libraries(libopenmc dagmc-shared)
 
   if(OPENMC_USE_UWUW)
-    target_compile_definitions(libopenmc PRIVATE OPENMC_UWUW)
+    target_compile_definitions(libopenmc PRIVATE OPENMC_UWUW_ENABLED)
     target_link_libraries(libopenmc uwuw-shared)
   endif()
 elseif(OPENMC_USE_UWUW)
@@ -502,7 +516,7 @@ elseif(OPENMC_USE_UWUW)
 endif()
 
 if(OPENMC_USE_LIBMESH)
-  target_compile_definitions(libopenmc PRIVATE LIBMESH)
+  target_compile_definitions(libopenmc PRIVATE OPENMC_LIBMESH_ENABLED)
   target_link_libraries(libopenmc PkgConfig::LIBMESH)
 endif()
 
@@ -525,11 +539,6 @@ if (OPENMC_BUILD_TESTS)
   add_subdirectory(tests/cpp_unit_tests)
 endif()
 
-if (OPENMC_USE_MCPL)
-  target_compile_definitions(libopenmc PUBLIC OPENMC_MCPL)
-  target_link_libraries(libopenmc MCPL::mcpl)
-endif()
-
 #===============================================================================
 # Log build info that this executable can report later
 #===============================================================================

Dockerfile

@@ -24,7 +24,7 @@ ARG compile_cores=1
 ARG build_dagmc=off
 ARG build_libmesh=off
 
-FROM debian:bookworm-slim AS dependencies
+FROM ubuntu:24.04 AS dependencies
 
 ARG compile_cores
 ARG build_dagmc
@@ -96,6 +96,7 @@ RUN if [ "$build_dagmc" = "on" ]; then \
         # Install addition packages required for DAGMC
         apt-get -y install libeigen3-dev libnetcdf-dev libtbb-dev libglfw3-dev \
         && pip install --upgrade numpy \
+        && pip install --no-cache-dir setuptools cython \
         # Clone and install EMBREE
         && mkdir -p $HOME/EMBREE && cd $HOME/EMBREE \
         && git clone --single-branch -b ${EMBREE_TAG} --depth 1 ${EMBREE_REPO} \