Add seed to FCPS

Author: imallona

Clustering_conda.yml

@@ -24,7 +24,7 @@ metric_collectors:
     software_environment: "fcps"
     repository:
       url: https://github.com/imallona/clustering_report
-      commit: df50d47 #75d799b # 1d6bdf5
+      commit: ccdaf84
     inputs:
       - metrics.scores
     outputs:
@@ -165,7 +165,7 @@ stages:
         software_environment: "fcps"
         repository:
           url: https://github.com/imallona/clustbench_fcps
-          commit: 272fa5f
+          commit: 8a47a0d
         parameters:
           # - values: ["--method", "FCPS_AdaptiveDensityPeak"] # not in conda
           - values: ["--method", "FCPS_Minimax"]

Clustering_oras.yml

@@ -24,7 +24,7 @@ metric_collectors:
     software_environment: "fcps"
     repository:
       url: https://github.com/imallona/clustering_report
-      commit: df50d47 # 75d799b # 1d6bdf5
+      commit: ccdaf84
     inputs:
       - metrics.scores
     outputs:
@@ -165,7 +165,7 @@ stages:
         software_environment: "fcps"
         repository:
           url: https://github.com/imallona/clustbench_fcps
-          commit: 272fa5f
+          commit: 8a47a0d
         parameters:
           # - values: ["--method", "FCPS_AdaptiveDensityPeak"] # not in conda
           - values: ["--method", "FCPS_Minimax"]

Makefile

@@ -1,16 +1,20 @@
-MAX_CORES ?= 12
+MAX_CORES ?= 50
 
 # with continue on error (-k)
 OB_CMD=ob run benchmark -k --local --cores ${MAX_CORES} --yes
 
 # prepare_apptainer_env:
 # 	cd envs && bash build_singularity.sh
 
-run_with_apptainer_unpinned_oras:
-	 ${OB_CMD} -b Clustering_oras.yml
-	 mv out out_singularity_$(shell date +'%Y%m%d%H%M')
-run_with_conda:
+all: run_with_default_conda run_with_unpinned_oras
+
+run_with_default_conda:
 	 ${OB_CMD} -b Clustering_conda.yml
 	 mv out out_conda_$(shell date +'%Y%m%d%H%M')
 
+run_with_unpinned_oras:
+	 ${OB_CMD} -b Clustering_oras.yml
+	 mv out out_singularity_$(shell date +'%Y%m%d%H%M')
+
+
 ## knit_marks_report: