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45 | 45 | "from mobius import homolog_scanning\n",
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46 | 46 | "from mobius import convert_FASTA_to_HELM, convert_HELM_to_FASTA\n",
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47 | 47 | "from mobius import VinaScorer\n",
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48 |
| - "from mobius.utils import MolFromHELM\n", |
49 |
| - "from mobius.utils import generate_biopolymer_design_protocol_from_probabilities\n", |
50 |
| - "\n", |
51 |
| - "from mobius.utils import constrained_sum_sample_nonneg\n", |
52 |
| - "from mobius.optimizers.genetic_algorithm import _load_polymer_design_from_config\n", |
53 |
| - "from mobius.optimizers.genetic_algorithm import _generate_random_polymers_from_designs\n", |
54 |
| - "\n", |
55 |
| - "from rdkit.ML.Cluster import Butina\n", |
56 |
| - "from rdkit.Chem import rdFMCS\n", |
57 |
| - "from rdkit.Chem import AllChem, rdMolAlign\n", |
58 |
| - "from rdkit.Chem import rdDistGeom\n", |
59 |
| - "from rdkit.Chem import rdForceFieldHelpers\n", |
60 |
| - "from rdkit.Geometry import Point3D\n", |
61 |
| - "\n", |
62 |
| - "from scrubber import Scrub\n", |
63 |
| - "from scrubber.protonate import AcidBaseConjugator\n", |
64 |
| - "from mobius.structure.vina import constrained_embed_multiple_confs" |
| 48 | + "from mobius.utils import MolFromHELM\n" |
65 | 49 | ]
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66 | 50 | },
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67 | 51 | {
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