Initial commit.

Add all experiment code, datasets and results files.

Author: itsluketwist

.github/workflows/check.yaml

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+name: check
+
+on:
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: [ main ]
+
+jobs:
+
+  # linting job configuration and steps
+  lint:
+
+    runs-on: ubuntu-latest
+
+    strategy:
+      matrix:
+        # only need to lint the latest version
+        python-version: ["3.11"]
+
+    steps:
+      - name: 1. Checkout the code...
+        uses: actions/checkout@v3
+
+      - name: 2. Configure Python version ${{ matrix.python-version }}...
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ matrix.python-version }}
+          architecture: "x64"
+
+      - name: 3. Run the linters...
+        uses: pre-commit/[email protected]

.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/#use-with-ide
+.pdm.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+.idea/
+
+.ruff*
+.DS_STORE
+
+# project
+todo.txt
+my_notebooks/
+output/archive
+/output/*/archive/*
+/output/*/*/archive/*
+/data/raw/*
+/src/plot/*

.pre-commit-config.yaml

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+files: '.*'
+
+repos:
+# pre-commit
+-   repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: 'v5.0.0'
+    hooks:
+      - id: check-case-conflict
+      - id: end-of-file-fixer
+      - id: trailing-whitespace
+      - id: requirements-txt-fixer
+      - id: check-yaml
+      - id: check-toml
+      - id: check-json
+
+# isort
+-   repo: https://github.com/PyCQA/isort
+    rev: '5.13.2'
+    hooks:
+      - id: isort
+        args: ["--line-length=88", "--multi-line=3", "--lines-after-imports=2", "--trailing-comma"]
+
+# ruff linter and formatter
+-   repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.7.4
+    hooks:
+      - id: ruff
+        types_or: [ python, pyi, jupyter ]
+        args: [ --fix ]
+      - id: ruff-format
+        types_or: [ python, pyi, jupyter ]
+
+# mypy type-checker
+-   repo: https://github.com/pre-commit/mirrors-mypy
+    rev: 'v1.13.0'
+    hooks:
+      - id: mypy
+        args: ["--show-error-codes", "--ignore-missing-imports"]
+        additional_dependencies: [ types-requests ]