Enable additional pipeline steps and add PRISM AUC matrix in data-prep-pipeline

Author: naquib314

data-prep-pipeline/data_prep_pipeline/release_inputs_internal.template

@@ -112,6 +112,11 @@ add-if-missing {
     "dataset_id": PREPROCESS_TAIGA_ID(release_taiga_id, "OmicsInferredMolecularSubtypes")
 }
 
+add-if-missing {
+  "type": "prism_oncology_reference_auc_matrix",
+  "dataset_id": PREPROCESS_TAIGA_ID(release_taiga_id, "PRISMOncologyReferenceLog2AUCMatrix") 
+}
+
 # Dummy artifact for filter portal compounds
 add-if-missing {
     "type": "stub-artifact"

pipeline/_run_common.conseq

@@ -6,7 +6,7 @@ include "nonquarterly-processed.conseq"
 include "preprocess_raw_biom_matrix.conseq"
 include "reformat_deps.conseq"
 include "tda.conseq"
-# include "predictability/predictability.conseq"
+include "predictability/predictability.conseq"
 include "reformat_repurposing_data.conseq"
 include "dose_replicate_reformat.conseq"
 include "pref_essential_genes.conseq"
@@ -17,9 +17,9 @@ include "context_explorer/get_data_availability.conseq"
 include "context_explorer/get_context_analysis.conseq"
 include "context_explorer/get_subtype_tree.conseq"
 include "context_explorer/get_subtype_context_matrix.conseq"
-# include "data_page/get_all_data_availability.conseq"
-# include "celligner/celligner.conseq"
-# include "make_compound_summary_table.conseq"
+include "data_page/get_all_data_availability.conseq"
+include "celligner/celligner.conseq"
+include "make_compound_summary_table.conseq"
 # include "cor_analysis/cor_analysis.conseq"
 
 # all of the run_xxx.conseq files define publish_dest as INVALID because