diff --git a/.gitignore b/.gitignore index 18d553d3c..16867009c 100644 --- a/.gitignore +++ b/.gitignore @@ -3,6 +3,8 @@ scripts # C extensions *.so +cortex/formats.c +cortex/openctm.c # Packages *.egg diff --git a/cortex/align.py b/cortex/align.py index f95bac233..2a49a2435 100644 --- a/cortex/align.py +++ b/cortex/align.py @@ -75,7 +75,7 @@ def save_callback(aligner): return m -def automatic(subject, xfmname, reference, noclean=False): +def automatic(subject, xfmname, reference, noclean=False, bbrtype="signed"): """Create an automatic alignment using the FLIRT boundary-based alignment (BBR) from FSL. If `noclean`, intermediate files will not be removed from /tmp. The `reference` image and resulting @@ -121,16 +121,17 @@ def automatic(subject, xfmname, reference, noclean=False): raw = db.get_anat(subject, type='raw').get_filename() bet = db.get_anat(subject, type='brainmask').get_filename() wmseg = db.get_anat(subject, type='whitematter').get_filename() - # Compute anatomical-to-epi transform + #Compute anatomical-to-epi transform print('FLIRT pre-alignment') cmd = '{fslpre}flirt -in {epi} -ref {bet} -dof 6 -omat {cache}/init.mat'.format( - fslpre=fsl_prefix, cache=cache, epi=absreference, bet=bet) + fslpre=fsl_prefix, cache=cache, epi=absreference, bet=bet) if sp.call(cmd, shell=True) != 0: - raise IOError('Error calling initial FLIRT') + raise IOError('Error calling initial FLIRT') + print('Running BBR') # Run epi-to-anat transform (this is more stable than anat-to-epi in FSL!) - cmd = '{fslpre}flirt -in {epi} -ref {raw} -dof 6 -cost bbr -wmseg {wmseg} -init {cache}/init.mat -omat {cache}/out.mat -schedule {schfile}' - cmd = cmd.format(fslpre=fsl_prefix, cache=cache, raw=raw, wmseg=wmseg, epi=absreference, schfile=schfile) + cmd = '{fslpre}flirt -in {epi} -ref {raw} -dof 6 -cost bbr -wmseg {wmseg} -init {cache}/init.mat -omat {cache}/out.mat -schedule {schfile} -bbrtype {bbrtype}' + cmd = cmd.format(fslpre=fsl_prefix, cache=cache, raw=bet, wmseg=wmseg, epi=absreference, schfile=schfile, bbrtype=bbrtype) if sp.call(cmd, shell=True) != 0: raise IOError('Error calling BBR flirt') diff --git a/cortex/database.py b/cortex/database.py index ac5a9ac64..7cf117303 100644 --- a/cortex/database.py +++ b/cortex/database.py @@ -280,6 +280,9 @@ def get_surfinfo(self, subject, type="curvature", recache=False, **kwargs): ------- verts : Vertex class If the surface information has "left" and "right" entries, a Vertex class is returned + + - OR - + npz : npzfile Otherwise, an npz object is returned. Remember to close it! """ diff --git a/cortex/dataset/__init__.py b/cortex/dataset/__init__.py index 0792fbc9f..07ba1f9e6 100644 --- a/cortex/dataset/__init__.py +++ b/cortex/dataset/__init__.py @@ -1,12 +1,10 @@ """Module for maintaining brain data and their masks -Three basic classes, with child classes: +Four basic classes: 1. Dataset - 2. BrainData - a. VolumeData - b. VertexData - 3. View - a. DataView + 2. Volume/Vertex + 3. VolumeRGB/VertexRGB + 4. Volume2D/Vertex2D Dataset holds a collection of View and BrainData objects. It provides a thin wrapper around h5py to store data. Datasets will store all View and BrainData @@ -93,7 +91,8 @@ def from_file(cls, filename): try: ds.views[name] = Dataview.from_hdf(node) except: - warnings.warn("Could not load view '%s'"%node.name) + import traceback + traceback.print_exc() db.auxfile = None diff --git a/cortex/dataset/braindata.py b/cortex/dataset/braindata.py index 87235ade8..6338edc0b 100644 --- a/cortex/dataset/braindata.py +++ b/cortex/dataset/braindata.py @@ -64,7 +64,7 @@ def to_json(self, simple=False): subject=self.subject, min=float(np.nan_to_num(self.data).min()), max=float(np.nan_to_num(self.data).max()), - shape=self.shape)) + )) return sdict @classmethod @@ -112,7 +112,9 @@ def __init__(self, data, subject, xfmname, mask=None, **kwargs): def to_json(self, simple=False): if simple: - return super(VolumeData, self).to_json(simple=simple) + sdict = super(VolumeData, self).to_json(simple=simple) + sdict["shape"] = self.shape + return sdict xfm = db.get_xfm(self.subject, self.xfmname, 'coord').xfm sdict = dict(xfm=[list(np.array(xfm).ravel())], data=[self.name]) @@ -201,9 +203,10 @@ def volume(self): def save(self, filename, name=None): """Save the dataset into an hdf file with the provided name """ + import os if isinstance(filename, str): fname, ext = os.path.splitext(filename) - if ext in (".hdf", ".h5"): + if ext in (".hdf", ".h5",".hf5"): h5 = h5py.File(filename, "a") self._write_hdf(h5, name=name) h5.close() @@ -331,6 +334,16 @@ def __getitem__(self, idx): #return VertexData(self.data[idx], self.subject, **self.attrs) return self.copy(self.data[idx]) + def to_json(self, simple=False): + if simple: + sdict = dict(split=self.llen, frames=self.vertices.shape[0]) + sdict.update(super(VertexData, self).to_json(simple=simple)) + return sdict + + sdict = dict(data=[self.name]) + sdict.update(super(VertexData, self).to_json()) + return sdict + @property def vertices(self): verts = self.data @@ -378,9 +391,11 @@ def __init__(self, dv): self.data = dv.data def __getitem__(self, masktype): - s, x = self.dv.subject, self.dv.xfmname - mask = db.get_mask(s, x, masktype) - return self.dv.copy(self.dv.volume[:,mask].squeeze()) + try: + mask = db.get_mask(self.dv.subject, self.dv.xfmname, masktype) + return self.dv.copy(self.dv.volume[:,mask].squeeze()) + except: + self.dv.copy(self.dv.volume[:, mask].squeeze()) def _hash(array): '''A simple numpy hash function''' diff --git a/cortex/dataset/view2D.py b/cortex/dataset/view2D.py index e626de440..93a824daa 100644 --- a/cortex/dataset/view2D.py +++ b/cortex/dataset/view2D.py @@ -116,7 +116,9 @@ def raw(self): if self.dim1.xfmname != self.dim2.xfmname: raise ValueError("Both Volumes must have same xfmname to generate single raw volume") - if self.dim1.linear and self.dim2.linear and self.dim1.mask == self.dim2.mask: + if ((self.dim1.linear and self.dim2.linear) and + (self.dim1.mask.shape == self.dim2.mask.shape) and + np.all(self.dim1.mask == self.dim2.mask)): r, g, b, a = self._to_raw(self.dim1.data, self.dim2.data) else: r, g, b, a = self._to_raw(self.dim1.volume, self.dim2.volume) @@ -128,7 +130,7 @@ def raw(self): def xfmname(self): return self.dim1.xfmname -class Vertex2D(Dataview): +class Vertex2D(Dataview2D): _cls = VertexData def __init__(self, dim1, dim2, subject=None, description="", cmap=None, vmin=None, vmax=None, vmin2=None, vmax2=None, **kwargs): @@ -155,4 +157,4 @@ def __repr__(self): @property def raw(self): r, g, b, a = self._to_raw(self.dim1.data, self.dim2.data) - return VertexRGB(r, g, b, alpha=a, subject=self.dim1.subject) \ No newline at end of file + return VertexRGB(r, g, b, alpha=a, subject=self.dim1.subject) diff --git a/cortex/dataset/viewRGB.py b/cortex/dataset/viewRGB.py index d6a5eb541..675131226 100644 --- a/cortex/dataset/viewRGB.py +++ b/cortex/dataset/viewRGB.py @@ -179,13 +179,21 @@ def vertices(self): verts = [] for dv in (self.red, self.green, self.blue, alpha): - vert = dv.vertices + vert = dv.vertices.copy() if vert.dtype != np.uint8: - if vert.min() < 0: - vert -= vert.min() - if vert.max() > 1: - vert /= vert.max() - vert = (vert * 255).astype(np.uint8) + if dv.vmin is None: + if vert.min() < 0: + vert -= vert.min() + else: + vert -= dv.vmin + + if dv.vmax is None: + if vert.max() > 1: + vert /= vert.max() + else: + vert /= dv.vmax - dv.vmin + + vert = (np.clip(vert, 0, 1) * 255).astype(np.uint8) verts.append(vert) return np.array(verts).transpose([1, 2, 0]) diff --git a/cortex/dataset/views.py b/cortex/dataset/views.py index 6743fa4f0..b2972c634 100644 --- a/cortex/dataset/views.py +++ b/cortex/dataset/views.py @@ -219,8 +219,14 @@ def raw(self): cm.register_cmap(self.cmap,cmap) else: cmap = cm.get_cmap(self.cmap) - norm = colors.Normalize(self.vmin, self.vmax) # Does this do anything? - return np.rollaxis(cmap(self.data), -1) + elif isinstance(self.cmap,colors.Colormap): + cmap = self.cmap + # Normalize colors according to vmin, vmax + norm = colors.Normalize(self.vmin, self.vmax) + cmapper = cm.ScalarMappable(norm=norm, cmap=cmap) + color_data = cmapper.to_rgba(self.data.flatten()).reshape(self.data.shape+(4,)) + # rollaxis puts the last color dimension first, to allow output of separate channels: r,g,b,a = dataset.raw + return np.rollaxis(color_data, -1) class Multiview(Dataview): def __init__(self, views, description=""): diff --git a/cortex/db.py b/cortex/db.py deleted file mode 100644 index 978bde2e1..000000000 --- a/cortex/db.py +++ /dev/null @@ -1,461 +0,0 @@ -""" -Surface database functions -========================== - -This module creates a singleton object surfs_ which allows easy access to surface files in the filestore. - -.. _surfs: :class:`Database` -""" -import os -import re -import glob -import time -import json -import shutil -import numpy as np - -from . import options - -filestore = options.config.get('basic', 'filestore') - -class SubjectDB(object): - def __init__(self, subj): - self.subject = subj - self._transforms = None - self._surfaces = None - - @property - def transforms(self): - if self._transforms is not None: - return self._transforms - self._transforms = XfmDB(self.subject) - return self._transforms - - @property - def surfaces(self): - if self._surfaces is not None: - return self._surfaces - self._surfaces = SurfaceDB(self.subject) - return self._surfaces - -class SurfaceDB(object): - def __init__(self, subj): - self.subject = subj - self.types = {} - for name in surfs.getFiles(subj)['surfs'].keys(): - self.types[name] = Surf(subj, name) - - def __repr__(self): - return "Surfaces: [{surfs}]".format(surfs=', '.join(list(self.types.keys()))) - - def __dir__(self): - return list(self.types.keys()) - - def __getattr__(self, attr): - if attr in self.types: - return self.types[attr] - raise AttributeError(attr) - -class Surf(object): - def __init__(self, subject, surftype): - self.subject, self.surftype = subject, surftype - - def get(self, hemisphere="both"): - return surfs.getSurf(self.subject, self.surftype, hemisphere) - - def show(self, hemisphere="both"): - from mayavi import mlab - pts, polys = surfs.getSurf(self.subject, self.surftype, hemisphere, merge=True, nudge=True) - return mlab.triangular_mesh(pts[:,0], pts[:,1], pts[:,2], polys) - -class XfmDB(object): - def __init__(self, subj): - self.subject = subj - self.xfms = surfs.getFiles(subj)['xfms'] - - def __getitem__(self, name): - if name in self.xfms: - return XfmSet(self.subject, name) - raise AttributeError - - def __repr__(self): - return "Transforms: [{xfms}]".format(xfms=",".join(self.xfms)) - -class XfmSet(object): - def __init__(self, subj, name): - self.subject = subj - self.name = name - jspath = os.path.join(filestore, subj, 'transforms', name, 'matrices.xfm') - self._jsdat = json.load(open(jspath)) - self.masks = MaskSet(subj, name) - - def __getattr__(self, attr): - if attr in self._jsdat: - return surfs.getXfm(self.subject, self.name, attr) - raise AttributeError - - def __repr__(self): - return "Types: {types}".format(types=", ".join(self._jsdat.keys())) - -class MaskSet(object): - def __init__(self, subj, name): - self.subject = subj - self.xfmname = name - maskpath = surfs.getFiles(subj)['masks'].format(xfmname=name, type='*') - self._masks = dict((os.path.split(path)[1][5:-7], path) for path in glob.glob(maskpath)) - - def __getitem__(self, item): - import nibabel - return nibabel.load(self._masks[item]).get_data().T - - def __repr__(self): - return "Masks: [{types}]".format(types=', '.join(self._masks.keys())) - -class Database(object): - """ - Database() - - Surface database - - Attributes - ---------- - This database object dynamically generates handles to all subjects within the filestore. - """ - def __init__(self): - subjs = os.listdir(os.path.join(filestore)) - self.subjects = dict([(sname, SubjectDB(sname)) for sname in subjs]) - self.auxfile = None - - def __repr__(self): - subjs = ", ".join(sorted(self.subjects.keys())) - return """Pycortex database\n Subjects: {subjs}""".format(subjs=subjs) - - def __getattr__(self, attr): - if attr in self.subjects: - return self.subjects[attr] - else: - raise AttributeError - - def __dir__(self): - return ["loadXfm","getXfm", "getSurf"] + list(self.subjects.keys()) - - def getAnat(self, subject, type='raw', recache=False, **kwargs): - types = dict( - raw='nii.gz', - brainmask='nii.gz', - whitematter='nii.gz', - voxelize='nii.gz', - flatmask='npz', - curvature='npz', - thickness='npz', - distortion='npz', - sulcaldepth='npz', - ) - - opts = "" - if len(kwargs) > 0: - opts = "[%s]"%','.join(["%s=%s"%i for i in kwargs.items()]) - anatform = self.getFiles(subject)['anats'] - anatfile = anatform.format(type=type, opts=opts, ext=types[type]) - - if not os.path.exists(anatfile) or recache: - print("Generating %s anatomical..."%type) - from . import anat - getattr(anat, type)(anatfile, subject, **kwargs) - - if types[type] == 'nii.gz': - import nibabel - return nibabel.load(anatfile) - elif types[type] == 'npz': - npz = np.load(anatfile) - if "left" in npz and "right" in npz: - from .dataset import VertexData - return VertexData(np.hstack([npz['left'], npz['right']]), subject) - return npz - return anatfile - - def getOverlay(self, subject, type='rois', **kwargs): - if type == "rois": - from . import svgroi - pts, polys = self.getSurf(subject, "flat", merge=True, nudge=True) - svgfile = self.getFiles(subject)['rois'] - if self.auxfile is not None: - try: - tf = self.auxfile.getOverlay(subject, type) - svgfile = tf.name - except (AttributeError, IOError): - pass - - if 'pts' in kwargs: - pts = kwargs['pts'] - del kwargs['pts'] - return svgroi.get_roipack(svgfile, pts, polys, **kwargs) - if type == "external": - from . import svgroi - pts, polys = self.getSurf(subject, "flat", merge=True, nudge=True) - #svgfile = self.getFiles(subject)['rois'] - svgfile = kwargs["svgfile"] - del kwargs["svgfile"] - if 'pts' in kwargs: - pts = kwargs['pts'] - del kwargs['pts'] - return svgroi.get_roipack(svgfile, pts, polys, **kwargs) - - raise TypeError('Invalid overlay type') - - def loadXfm(self, subject, name, xfm, xfmtype="magnet", reference=None): - """ - Load a transform into the surface database. If the transform exists already, update it - If it does not exist, copy the reference epi into the filestore and insert. - - Parameters - ---------- - subject : str - Name of the subject - name : str - Name to identify the transform - xfm : (4,4) array - The affine transformation matrix - xfmtype : str, optional - Type of the provided transform, either magnet space or coord space. Defaults to magnet. - reference : str, optional - The nibabel-compatible reference image associated with this transform. Required if name not in database - """ - if xfmtype not in ["magnet", "coord"]: - raise TypeError("Unknown transform type") - - import nibabel - - path = os.path.join(filestore, subject, "transforms", name) - fname = os.path.join(path, "matrices.xfm") - if os.path.exists(fname): - jsdict = json.load(open(fname)) - else: - os.mkdir(path) - if reference is None: - raise ValueError("Please specify a reference") - fpath = os.path.join(path, "reference.nii.gz") - nib = nibabel.load(reference) - data = nib.get_data() - if len(data.shape) > 3: - import warnings - warnings.warn('You are importing a 4D dataset, automatically selecting the first volume as reference') - data = data[...,0] - out = nibabel.Nifti1Image(data, nib.get_affine(), header=nib.get_header()) - nibabel.save(out, fpath) - - jsdict = dict() - - nib = nibabel.load(os.path.join(path, "reference.nii.gz")) - if xfmtype == "magnet": - jsdict['magnet'] = xfm.tolist() - jsdict['coord'] = np.dot(np.linalg.inv(nib.get_affine()), xfm).tolist() - elif xfmtype == "coord": - jsdict['coord'] = xfm.tolist() - jsdict['magnet'] = np.dot(nib.get_affine(), xfm).tolist() - - files = self.getFiles(subject) - if len(glob.glob(files['masks'].format(xfmname=name, type="*"))) > 0: - raise ValueError('Refusing to change a transfrom with masks') - - json.dump(jsdict, open(fname, "w"), sort_keys=True, indent=4) - - def getXfm(self, subject, name, xfmtype="coord"): - """Retrieves a transform from the filestore - - Parameters - ---------- - subject : str - Name of the subject - name : str - Name of the transform - xfmtype : str, optional - Type of transform to return. Defaults to coord. - """ - from .xfm import Transform - if xfmtype == 'coord': - try: - return self.auxfile.getXfm(subject, name) - except (AttributeError, IOError): - pass - - if name == "identity": - import nibabel - nib = self.getAnat(subject, 'raw') - return Transform(np.linalg.inv(nib.get_affine()), nib) - - fname = os.path.join(filestore, subject, "transforms", name, "matrices.xfm") - reference = os.path.join(filestore, subject, "transforms", name, "reference.nii.gz") - xfmdict = json.load(open(fname)) - return Transform(xfmdict[xfmtype], reference) - - def getSurf(self, subject, type, hemisphere="both", merge=False, nudge=False): - '''Return the surface pair for the given subject, surface type, and hemisphere. - - Parameters - ---------- - subject : str - Name of the subject - type : str - Type of surface to return, probably in (fiducial, inflated, - veryinflated, hyperinflated, superinflated, flat) - hemisphere : "lh", "rh" - Which hemisphere to return - merge : bool - Vstack the hemispheres, if requesting both - nudge : bool - Nudge the hemispheres apart from each other, for overlapping surfaces - (inflated, etc) - - Returns - ------- - left, right : - If request is for both hemispheres, otherwise: - pts, polys, norms : ((p,3) array, (f,3) array, (p,3) array or None) - For single hemisphere - ''' - try: - return self.auxfile.getSurf(subject, type, hemisphere, merge=merge, nudge=nudge) - except (AttributeError, IOError): - pass - - files = self.getFiles(subject)['surfs'] - - if hemisphere.lower() == "both": - left, right = [ self.getSurf(subject, type, hemisphere=h) for h in ["lh", "rh"]] - if type != "fiducial" and nudge: - left[0][:,0] -= left[0].max(0)[0] - right[0][:,0] -= right[0].min(0)[0] - - if merge: - pts = np.vstack([left[0], right[0]]) - polys = np.vstack([left[1], right[1]+len(left[0])]) - return pts, polys - - return left, right - elif hemisphere.lower() in ("lh", "left"): - hemi = "lh" - elif hemisphere.lower() in ("rh", "right"): - hemi = "rh" - else: - raise TypeError("Not a valid hemisphere name") - - if type == 'fiducial' and 'fiducial' not in files: - wpts, polys = self.getSurf(subject, 'wm', hemi) - ppts, _ = self.getSurf(subject, 'pia', hemi) - return (wpts + ppts) / 2, polys - - try: - from . import formats - return formats.read(os.path.splitext(files[type][hemi])[0]) - except KeyError: - raise IOError - - def loadMask(self, subject, xfmname, type, mask): - fname = self.getFiles(subject)['masks'].format(xfmname=xfmname, type=type) - if os.path.exists(fname): - raise IOError('Refusing to overwrite existing mask') - - import nibabel - xfm = self.getXfm(subject, xfmname) - if xfm.shape != mask.shape: - raise ValueError("Invalid mask shape: must match shape of reference image") - affine = xfm.reference.get_affine() - nib = nibabel.Nifti1Image(mask.astype(np.uint8).T, affine) - nib.to_filename(fname) - - def getMask(self, subject, xfmname, type='thick'): - try: - self.auxfile.getMask(subject, xfmname, type) - except (AttributeError, IOError): - pass - - fname = self.getFiles(subject)['masks'].format(xfmname=xfmname, type=type) - try: - import nibabel - nib = nibabel.load(fname) - return nib.get_data().T != 0 - except IOError: - print('Mask not found, generating...') - from .utils import get_cortical_mask - mask = get_cortical_mask(subject, xfmname, type) - self.loadMask(subject, xfmname, type, mask) - return mask - - def getCoords(self, subject, xfmname, hemisphere="both", magnet=None): - """Calculate the coordinates of each vertex in the epi space by transforming the fiducial to the coordinate space - - Parameters - ---------- - subject : str - Name of the subject - name : str - Name of the transform - hemisphere : str, optional - Which hemisphere to return. If "both", return concatenated. Defaults to "both". - """ - import warnings - warnings.warn('Please use a Mapper object instead', DeprecationWarning) - - if magnet is None: - xfm = self.getXfm(subject, xfmname, xfmtype="coord") - else: - xfm = self.getXfm(subject, xfmname, xfmtype="magnet") - xfm = np.linalg.inv(magnet) * xfm - - coords = [] - vtkTmp = self.getSurf(subject, "fiducial", hemisphere=hemisphere, nudge=False) - if not isinstance(vtkTmp,(tuple,list)): - vtkTmp = [vtkTmp] - for pts, polys in vtkTmp: - wpts = np.vstack([pts.T, np.ones(len(pts))]) - coords.append(np.dot(xfm.xfm, wpts)[:3].round().astype(int).T) - - return coords - - def getFiles(self, subject): - """Get a dictionary with a list of all candidate filenames for associated data, such as roi overlays, flatmap caches, and ctm caches. - """ - surfparse = re.compile(r'(.*)/([\w-]+)_([\w-]+)_(\w+).*') - surfpath = os.path.join(filestore, subject, "surfaces") - - ctmcache = "%s_[{types}]_{method}_{level}.json"%subject - projcache = "{xfmname}_{projection}.npz" - - surfs = dict() - for surf in os.listdir(surfpath): - ssurf = os.path.splitext(surf)[0].split('_') - name = '_'.join(ssurf[:-1]) - hemi = ssurf[-1] - - if name not in surfs: - surfs[name] = dict() - surfs[name][hemi] = os.path.abspath(os.path.join(surfpath,surf)) - - filenames = dict( - surfs=surfs, - xfms=os.listdir(os.path.join(filestore, subject, "transforms")), - xfmdir=os.path.join(filestore, subject, "transforms", "{xfmname}", "matrices.xfm"), - anats=os.path.join(filestore, subject, "anatomicals", '{type}{opts}.{ext}'), - masks=os.path.join(filestore, subject, 'transforms', '{xfmname}', 'mask_{type}.nii.gz'), - cachedir=os.path.join(filestore, subject, "cache"), - ctmcache=os.path.join(filestore, subject, "cache", ctmcache), - projcache=os.path.join(filestore, subject, "cache", projcache), - rois=os.path.join(filestore, subject, "rois.svg").format(subj=subject), - ) - - return filenames - - def makeSubj(self, subject): - if os.path.exists(os.path.join(filestore, subject)): - if raw_input("Are you sure you want to overwrite this existing subject? Type YES\n") == "YES": - shutil.rmtree(os.path.join(filestore, subject)) - - for dirname in ['transforms', 'anatomicals', 'cache', 'surfaces']: - try: - path = os.path.join(filestore, subject, dirname) - os.makedirs(path) - except OSError: - print("Error making directory %s"%path) - -surfs = Database() diff --git a/cortex/formats.c b/cortex/formats.c deleted file mode 100644 index 67488f08c..000000000 --- a/cortex/formats.c +++ /dev/null @@ -1,11306 +0,0 @@ -/* Generated by Cython 0.20.1 on Wed Oct 1 14:14:49 2014 */ - -#define PY_SSIZE_T_CLEAN -#ifndef CYTHON_USE_PYLONG_INTERNALS -#ifdef PYLONG_BITS_IN_DIGIT -#define CYTHON_USE_PYLONG_INTERNALS 0 -#else -#include "pyconfig.h" -#ifdef PYLONG_BITS_IN_DIGIT -#define CYTHON_USE_PYLONG_INTERNALS 1 -#else -#define CYTHON_USE_PYLONG_INTERNALS 0 -#endif -#endif -#endif -#include "Python.h" -#ifndef Py_PYTHON_H - #error Python headers needed to compile C extensions, please install development version of Python. -#elif PY_VERSION_HEX < 0x02040000 - #error Cython requires Python 2.4+. -#else -#define CYTHON_ABI "0_20_1" -#include /* For offsetof */ -#ifndef offsetof -#define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) -#endif -#if !defined(WIN32) && !defined(MS_WINDOWS) - #ifndef __stdcall - #define __stdcall - #endif - #ifndef __cdecl - #define __cdecl - #endif - #ifndef __fastcall - #define __fastcall - #endif -#endif -#ifndef DL_IMPORT - #define DL_IMPORT(t) t -#endif -#ifndef DL_EXPORT - #define DL_EXPORT(t) t -#endif -#ifndef PY_LONG_LONG - #define PY_LONG_LONG LONG_LONG -#endif -#ifndef Py_HUGE_VAL - #define Py_HUGE_VAL HUGE_VAL -#endif -#ifdef PYPY_VERSION -#define CYTHON_COMPILING_IN_PYPY 1 -#define CYTHON_COMPILING_IN_CPYTHON 0 -#else -#define CYTHON_COMPILING_IN_PYPY 0 -#define CYTHON_COMPILING_IN_CPYTHON 1 -#endif -#if CYTHON_COMPILING_IN_PYPY -#define Py_OptimizeFlag 0 -#endif -#if PY_VERSION_HEX < 0x02050000 - typedef int Py_ssize_t; - #define PY_SSIZE_T_MAX INT_MAX - #define PY_SSIZE_T_MIN INT_MIN - #define PY_FORMAT_SIZE_T "" - #define CYTHON_FORMAT_SSIZE_T "" - #define PyInt_FromSsize_t(z) PyInt_FromLong(z) - #define PyInt_AsSsize_t(o) __Pyx_PyInt_As_int(o) - #define PyNumber_Index(o) ((PyNumber_Check(o) && !PyFloat_Check(o)) ? 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(PySequence_GetSlice(obj, a, b)) : \ - (PyErr_Format(PyExc_TypeError, "'%.200s' object is unsliceable", (obj)->ob_type->tp_name), (PyObject*)0))) - #define __Pyx_PySequence_SetSlice(obj, a, b, value) (unlikely(!(obj)) ? \ - (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), -1) : \ - (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_SetSlice(obj, a, b, value)) : \ - (PyErr_Format(PyExc_TypeError, "'%.200s' object doesn't support slice assignment", (obj)->ob_type->tp_name), -1))) - #define __Pyx_PySequence_DelSlice(obj, a, b) (unlikely(!(obj)) ? \ - (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), -1) : \ - (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_DelSlice(obj, a, b)) : \ - (PyErr_Format(PyExc_TypeError, "'%.200s' object doesn't support slice deletion", (obj)->ob_type->tp_name), -1))) -#endif -#if PY_MAJOR_VERSION >= 3 - #define PyMethod_New(func, self, klass) ((self) ? 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The sign is irrelevant, an exponent with all bits 1 and - a nonzero mantissa means NaN. 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- Py_ssize_t len = Py_SIZE(list); - if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) { - Py_INCREF(x); - PyList_SET_ITEM(list, len, x); - Py_SIZE(list) = len+1; - return 0; - } - return PyList_Append(list, x); -} -#else -#define __Pyx_PyList_Append(L,x) PyList_Append(L,x) -#endif - -#if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) { - PyListObject* L = (PyListObject*) list; - Py_ssize_t len = Py_SIZE(list); - if (likely(L->allocated > len)) { - Py_INCREF(x); - PyList_SET_ITEM(list, len, x); - Py_SIZE(list) = len+1; - return 0; - } - return PyList_Append(list, x); -} -#else -#define __Pyx_ListComp_Append(L,x) PyList_Append(L,x) -#endif - -static double __Pyx__PyObject_AsDouble(PyObject* obj); /* proto */ -#if CYTHON_COMPILING_IN_PYPY -#define __Pyx_PyObject_AsDouble(obj) \ -(likely(PyFloat_CheckExact(obj)) ? 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(PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) : \ - __Pyx_GetItemInt_Generic(o, to_py_func(i)))) -#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ - __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \ - (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck); -#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ - __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \ - (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck); -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); 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- -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); - -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - #define __Pyx_CREAL(z) ((z).real()) - #define __Pyx_CIMAG(z) ((z).imag()) - #else - #define __Pyx_CREAL(z) (__real__(z)) - #define __Pyx_CIMAG(z) (__imag__(z)) - #endif -#else - #define __Pyx_CREAL(z) ((z).real) - #define __Pyx_CIMAG(z) ((z).imag) -#endif -#if (defined(_WIN32) || defined(__clang__)) && defined(__cplusplus) && CYTHON_CCOMPLEX - #define __Pyx_SET_CREAL(z,x) ((z).real(x)) - #define __Pyx_SET_CIMAG(z,y) ((z).imag(y)) -#else - #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x) - #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y) -#endif - -static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float); - -#if CYTHON_CCOMPLEX - #define __Pyx_c_eqf(a, b) ((a)==(b)) - #define __Pyx_c_sumf(a, b) ((a)+(b)) - #define __Pyx_c_difff(a, b) ((a)-(b)) - #define __Pyx_c_prodf(a, b) ((a)*(b)) - #define __Pyx_c_quotf(a, b) ((a)/(b)) - #define __Pyx_c_negf(a) (-(a)) - #ifdef __cplusplus - #define __Pyx_c_is_zerof(z) ((z)==(float)0) - #define __Pyx_c_conjf(z) (::std::conj(z)) - #if 1 - #define __Pyx_c_absf(z) (::std::abs(z)) - #define __Pyx_c_powf(a, b) (::std::pow(a, b)) - #endif - #else - #define __Pyx_c_is_zerof(z) ((z)==0) - #define __Pyx_c_conjf(z) (conjf(z)) - #if 1 - #define __Pyx_c_absf(z) (cabsf(z)) - #define __Pyx_c_powf(a, b) (cpowf(a, b)) - #endif - #endif -#else - static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex); - static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex); - #if 1 - static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex, __pyx_t_float_complex); - #endif -#endif - -static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double); - -#if CYTHON_CCOMPLEX - #define __Pyx_c_eq(a, b) ((a)==(b)) - #define __Pyx_c_sum(a, b) ((a)+(b)) - #define __Pyx_c_diff(a, b) ((a)-(b)) - #define __Pyx_c_prod(a, b) ((a)*(b)) - #define __Pyx_c_quot(a, b) ((a)/(b)) - #define __Pyx_c_neg(a) (-(a)) - #ifdef __cplusplus - #define __Pyx_c_is_zero(z) ((z)==(double)0) - #define __Pyx_c_conj(z) (::std::conj(z)) - #if 1 - #define __Pyx_c_abs(z) (::std::abs(z)) - #define __Pyx_c_pow(a, b) (::std::pow(a, b)) - #endif - #else - #define __Pyx_c_is_zero(z) ((z)==0) - #define __Pyx_c_conj(z) (conj(z)) - #if 1 - #define __Pyx_c_abs(z) (cabs(z)) - #define __Pyx_c_pow(a, b) (cpow(a, b)) - #endif - #endif -#else - static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex, __pyx_t_double_complex); 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- if (!tb || tb == Py_None) - tb = NULL; - else { - Py_INCREF(tb); - if (!PyTraceBack_Check(tb)) { - PyErr_SetString(PyExc_TypeError, - "raise: arg 3 must be a traceback or None"); - goto raise_error; - } - } - #if PY_VERSION_HEX < 0x02050000 - if (PyClass_Check(type)) { - #else - if (PyType_Check(type)) { - #endif -#if CYTHON_COMPILING_IN_PYPY - if (!value) { - Py_INCREF(Py_None); - value = Py_None; - } -#endif - PyErr_NormalizeException(&type, &value, &tb); - } else { - if (value) { - PyErr_SetString(PyExc_TypeError, - "instance exception may not have a separate value"); - goto raise_error; - } - value = type; - #if PY_VERSION_HEX < 0x02050000 - if (PyInstance_Check(type)) { - type = (PyObject*) ((PyInstanceObject*)type)->in_class; - Py_INCREF(type); - } else { - type = 0; - PyErr_SetString(PyExc_TypeError, - "raise: exception must be an old-style class or instance"); - goto raise_error; - } - #else - type = (PyObject*) Py_TYPE(type); - Py_INCREF(type); - if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { - PyErr_SetString(PyExc_TypeError, - "raise: exception class must be a subclass of BaseException"); - goto raise_error; - } - #endif - } - __Pyx_ErrRestore(type, value, tb); - return; -raise_error: - Py_XDECREF(value); - Py_XDECREF(type); - Py_XDECREF(tb); - return; -} -#else /* Python 3+ */ -static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { - PyObject* owned_instance = NULL; - if (tb == Py_None) { - tb = 0; - } else if (tb && !PyTraceBack_Check(tb)) { - PyErr_SetString(PyExc_TypeError, - "raise: arg 3 must be a traceback or None"); - goto bad; - } - if (value == Py_None) - value = 0; - if (PyExceptionInstance_Check(type)) { - if (value) { - PyErr_SetString(PyExc_TypeError, - "instance exception may not have a separate value"); - goto bad; - } - value = type; - type = (PyObject*) Py_TYPE(value); - } else if (PyExceptionClass_Check(type)) { - PyObject *instance_class = NULL; - if (value && PyExceptionInstance_Check(value)) { - instance_class = (PyObject*) Py_TYPE(value); - if (instance_class != type) { - if (PyObject_IsSubclass(instance_class, type)) { - type = instance_class; - } else { - instance_class = NULL; - } - } - } - if (!instance_class) { - PyObject *args; - if (!value) - args = PyTuple_New(0); - else if (PyTuple_Check(value)) { - Py_INCREF(value); - args = value; - } else - args = PyTuple_Pack(1, value); - if (!args) - goto bad; - owned_instance = PyObject_Call(type, args, NULL); - Py_DECREF(args); - if (!owned_instance) - goto bad; - value = owned_instance; - if (!PyExceptionInstance_Check(value)) { - PyErr_Format(PyExc_TypeError, - "calling %R should have returned an instance of " - "BaseException, not %R", - type, Py_TYPE(value)); - goto bad; - } - } - } else { - PyErr_SetString(PyExc_TypeError, - "raise: exception class must be a subclass of BaseException"); - goto bad; - } -#if PY_VERSION_HEX >= 0x03030000 - if (cause) { -#else - if (cause && cause != Py_None) { -#endif - PyObject *fixed_cause; - if (cause == Py_None) { - fixed_cause = NULL; - } else if (PyExceptionClass_Check(cause)) { - fixed_cause = PyObject_CallObject(cause, NULL); - if (fixed_cause == NULL) - goto bad; - } else if (PyExceptionInstance_Check(cause)) { - fixed_cause = cause; - Py_INCREF(fixed_cause); - } else { - PyErr_SetString(PyExc_TypeError, - "exception causes must derive from " - "BaseException"); - goto bad; - } - PyException_SetCause(value, fixed_cause); - } - PyErr_SetObject(type, value); - if (tb) { - PyThreadState *tstate = PyThreadState_GET(); - PyObject* tmp_tb = tstate->curexc_traceback; - if (tb != tmp_tb) { - Py_INCREF(tb); - tstate->curexc_traceback = tb; - Py_XDECREF(tmp_tb); - } - } -bad: - Py_XDECREF(owned_instance); - return; -} -#endif - -static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice( - PyObject* obj, Py_ssize_t cstart, Py_ssize_t cstop, - PyObject** _py_start, PyObject** _py_stop, PyObject** _py_slice, - int has_cstart, int has_cstop, CYTHON_UNUSED int wraparound) { -#if CYTHON_COMPILING_IN_CPYTHON - PyMappingMethods* mp; -#if PY_MAJOR_VERSION < 3 - PySequenceMethods* ms = Py_TYPE(obj)->tp_as_sequence; - if (likely(ms && ms->sq_slice)) { - if (!has_cstart) { - if (_py_start && (*_py_start != Py_None)) { - cstart = __Pyx_PyIndex_AsSsize_t(*_py_start); - if ((cstart == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; - } else - cstart = 0; - } - if (!has_cstop) { - if (_py_stop && (*_py_stop != Py_None)) { - cstop = __Pyx_PyIndex_AsSsize_t(*_py_stop); - if ((cstop == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; - } else - cstop = PY_SSIZE_T_MAX; - } - if (wraparound && unlikely((cstart < 0) | (cstop < 0)) && likely(ms->sq_length)) { - Py_ssize_t l = ms->sq_length(obj); - if (likely(l >= 0)) { - if (cstop < 0) { - cstop += l; - if (cstop < 0) cstop = 0; - } - if (cstart < 0) { - cstart += l; - if (cstart < 0) cstart = 0; - } - } else { - if (PyErr_ExceptionMatches(PyExc_OverflowError)) - PyErr_Clear(); - else - goto bad; - } - } - return ms->sq_slice(obj, cstart, cstop); - } -#endif - mp = Py_TYPE(obj)->tp_as_mapping; - if (likely(mp && mp->mp_subscript)) -#endif - { - PyObject* result; - PyObject *py_slice, *py_start, *py_stop; - if (_py_slice) { - py_slice = *_py_slice; - } else { - PyObject* owned_start = NULL; - PyObject* owned_stop = NULL; - if (_py_start) { - py_start = *_py_start; - } else { - if (has_cstart) { - owned_start = py_start = PyInt_FromSsize_t(cstart); - if (unlikely(!py_start)) goto bad; - } else - py_start = Py_None; - } - if (_py_stop) { - py_stop = *_py_stop; - } else { - if (has_cstop) { - owned_stop = py_stop = PyInt_FromSsize_t(cstop); - if (unlikely(!py_stop)) { - Py_XDECREF(owned_start); - goto bad; - } - } else - py_stop = Py_None; - } - py_slice = PySlice_New(py_start, py_stop, Py_None); - Py_XDECREF(owned_start); - Py_XDECREF(owned_stop); - if (unlikely(!py_slice)) goto bad; - } -#if CYTHON_COMPILING_IN_CPYTHON - result = mp->mp_subscript(obj, py_slice); -#else - result = PyObject_GetItem(obj, py_slice); -#endif - if (!_py_slice) { - Py_DECREF(py_slice); - } - return result; - } - PyErr_Format(PyExc_TypeError, - "'%.200s' object is unsliceable", Py_TYPE(obj)->tp_name); -bad: - return NULL; -} - -static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) { -#if CYTHON_COMPILING_IN_PYPY - return PyObject_RichCompareBool(s1, s2, equals); -#else - if (s1 == s2) { - return (equals == Py_EQ); - } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) { - const char *ps1, *ps2; - Py_ssize_t length = PyBytes_GET_SIZE(s1); - if (length != PyBytes_GET_SIZE(s2)) - return (equals == Py_NE); - ps1 = PyBytes_AS_STRING(s1); - ps2 = PyBytes_AS_STRING(s2); - if (ps1[0] != ps2[0]) { - return (equals == Py_NE); - } else if (length == 1) { - return (equals == Py_EQ); - } else { - int result = memcmp(ps1, ps2, (size_t)length); - return (equals == Py_EQ) ? (result == 0) : (result != 0); - } - } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) { - return (equals == Py_NE); - } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) { - return (equals == Py_NE); - } else { - int result; - PyObject* py_result = PyObject_RichCompare(s1, s2, equals); - if (!py_result) - return -1; - result = __Pyx_PyObject_IsTrue(py_result); - Py_DECREF(py_result); - return result; - } -#endif -} - -static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) { -#if CYTHON_COMPILING_IN_PYPY - return PyObject_RichCompareBool(s1, s2, equals); -#else -#if PY_MAJOR_VERSION < 3 - PyObject* owned_ref = NULL; -#endif - int s1_is_unicode, s2_is_unicode; - if (s1 == s2) { - goto return_eq; - } - s1_is_unicode = PyUnicode_CheckExact(s1); - s2_is_unicode = PyUnicode_CheckExact(s2); -#if PY_MAJOR_VERSION < 3 - if ((s1_is_unicode & (!s2_is_unicode)) && PyString_CheckExact(s2)) { - owned_ref = PyUnicode_FromObject(s2); - if (unlikely(!owned_ref)) - return -1; - s2 = owned_ref; - s2_is_unicode = 1; - } else if ((s2_is_unicode & (!s1_is_unicode)) && PyString_CheckExact(s1)) { - owned_ref = PyUnicode_FromObject(s1); - if (unlikely(!owned_ref)) - return -1; - s1 = owned_ref; - s1_is_unicode = 1; - } else if (((!s2_is_unicode) & (!s1_is_unicode))) { - return __Pyx_PyBytes_Equals(s1, s2, equals); - } -#endif - if (s1_is_unicode & s2_is_unicode) { - Py_ssize_t length; - int kind; - void *data1, *data2; - #if CYTHON_PEP393_ENABLED - if (unlikely(PyUnicode_READY(s1) < 0) || unlikely(PyUnicode_READY(s2) < 0)) - return -1; - #endif - length = __Pyx_PyUnicode_GET_LENGTH(s1); - if (length != __Pyx_PyUnicode_GET_LENGTH(s2)) { - goto return_ne; - } - kind = __Pyx_PyUnicode_KIND(s1); - if (kind != __Pyx_PyUnicode_KIND(s2)) { - goto return_ne; - } - data1 = __Pyx_PyUnicode_DATA(s1); - data2 = __Pyx_PyUnicode_DATA(s2); - if (__Pyx_PyUnicode_READ(kind, data1, 0) != __Pyx_PyUnicode_READ(kind, data2, 0)) { - goto return_ne; - } else if (length == 1) { - goto return_eq; - } else { - int result = memcmp(data1, data2, length * kind); - #if PY_MAJOR_VERSION < 3 - Py_XDECREF(owned_ref); - #endif - return (equals == Py_EQ) ? (result == 0) : (result != 0); - } - } else if ((s1 == Py_None) & s2_is_unicode) { - goto return_ne; - } else if ((s2 == Py_None) & s1_is_unicode) { - goto return_ne; - } else { - int result; - PyObject* py_result = PyObject_RichCompare(s1, s2, equals); - if (!py_result) - return -1; - result = __Pyx_PyObject_IsTrue(py_result); - Py_DECREF(py_result); - return result; - } -return_eq: - #if PY_MAJOR_VERSION < 3 - Py_XDECREF(owned_ref); - #endif - return (equals == Py_EQ); -return_ne: - #if PY_MAJOR_VERSION < 3 - Py_XDECREF(owned_ref); - #endif - return (equals == Py_NE); -#endif -} - -static double __Pyx__PyObject_AsDouble(PyObject* obj) { - PyObject* float_value; -#if CYTHON_COMPILING_IN_PYPY - float_value = PyNumber_Float(obj); -#else - PyNumberMethods *nb = Py_TYPE(obj)->tp_as_number; - if (likely(nb) && likely(nb->nb_float)) { - float_value = nb->nb_float(obj); - if (likely(float_value) && unlikely(!PyFloat_Check(float_value))) { - PyErr_Format(PyExc_TypeError, - "__float__ returned non-float (type %.200s)", - Py_TYPE(float_value)->tp_name); - Py_DECREF(float_value); - goto bad; - } - } else if (PyUnicode_CheckExact(obj) || PyBytes_CheckExact(obj)) { -#if PY_MAJOR_VERSION >= 3 - float_value = PyFloat_FromString(obj); -#else - float_value = PyFloat_FromString(obj, 0); -#endif - } else { - PyObject* args = PyTuple_New(1); - if (unlikely(!args)) goto bad; - PyTuple_SET_ITEM(args, 0, obj); - float_value = PyObject_Call((PyObject*)&PyFloat_Type, args, 0); - PyTuple_SET_ITEM(args, 0, 0); - Py_DECREF(args); - } -#endif - if (likely(float_value)) { - double value = PyFloat_AS_DOUBLE(float_value); - Py_DECREF(float_value); - return value; - } -bad: - return (double)-1; -} - -#if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE void __Pyx_crop_slice(Py_ssize_t* _start, Py_ssize_t* _stop, Py_ssize_t* _length) { - Py_ssize_t start = *_start, stop = *_stop, length = *_length; - if (start < 0) { - start += length; - if (start < 0) - start = 0; - } - if (stop < 0) - stop += length; - else if (stop > length) - stop = length; - *_length = stop - start; - *_start = start; - *_stop = stop; -} -static CYTHON_INLINE void __Pyx_copy_object_array(PyObject** CYTHON_RESTRICT src, PyObject** CYTHON_RESTRICT dest, Py_ssize_t length) { - PyObject *v; - Py_ssize_t i; - for (i = 0; i < length; i++) { - v = dest[i] = src[i]; - Py_INCREF(v); - } -} -static CYTHON_INLINE PyObject* __Pyx_PyList_GetSlice( - PyObject* src, Py_ssize_t start, Py_ssize_t stop) { - PyObject* dest; - Py_ssize_t length = PyList_GET_SIZE(src); - __Pyx_crop_slice(&start, &stop, &length); - if (unlikely(length <= 0)) - return PyList_New(0); - dest = PyList_New(length); - if (unlikely(!dest)) - return NULL; - __Pyx_copy_object_array( - ((PyListObject*)src)->ob_item + start, - ((PyListObject*)dest)->ob_item, - length); - return dest; -} -static CYTHON_INLINE PyObject* __Pyx_PyTuple_GetSlice( - PyObject* src, Py_ssize_t start, Py_ssize_t stop) { - PyObject* dest; - Py_ssize_t length = PyTuple_GET_SIZE(src); - __Pyx_crop_slice(&start, &stop, &length); - if (unlikely(length <= 0)) - return PyTuple_New(0); - dest = PyTuple_New(length); - if (unlikely(!dest)) - return NULL; - __Pyx_copy_object_array( - ((PyTupleObject*)src)->ob_item + start, - ((PyTupleObject*)dest)->ob_item, - length); - return dest; -} -#endif - -static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { - PyObject *local_type, *local_value, *local_tb; -#if CYTHON_COMPILING_IN_CPYTHON - PyObject *tmp_type, *tmp_value, *tmp_tb; - PyThreadState *tstate = PyThreadState_GET(); - local_type = tstate->curexc_type; - local_value = tstate->curexc_value; - local_tb = tstate->curexc_traceback; - tstate->curexc_type = 0; - tstate->curexc_value = 0; - tstate->curexc_traceback = 0; -#else - PyErr_Fetch(&local_type, &local_value, &local_tb); -#endif - PyErr_NormalizeException(&local_type, &local_value, &local_tb); -#if CYTHON_COMPILING_IN_CPYTHON - if (unlikely(tstate->curexc_type)) -#else - if (unlikely(PyErr_Occurred())) -#endif - goto bad; - #if PY_MAJOR_VERSION >= 3 - if (local_tb) { - if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0)) - goto bad; - } - #endif - Py_XINCREF(local_tb); - Py_XINCREF(local_type); - Py_XINCREF(local_value); - *type = local_type; - *value = local_value; - *tb = local_tb; -#if CYTHON_COMPILING_IN_CPYTHON - tmp_type = tstate->exc_type; - tmp_value = tstate->exc_value; - tmp_tb = tstate->exc_traceback; - tstate->exc_type = local_type; - tstate->exc_value = local_value; - tstate->exc_traceback = local_tb; - Py_XDECREF(tmp_type); - Py_XDECREF(tmp_value); - Py_XDECREF(tmp_tb); -#else - PyErr_SetExcInfo(local_type, local_value, local_tb); -#endif - return 0; -bad: - *type = 0; - *value = 0; - *tb = 0; - Py_XDECREF(local_type); - Py_XDECREF(local_value); - Py_XDECREF(local_tb); - return -1; -} - -static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { - PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); - if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { - PyErr_Format(PyExc_ImportError, - #if PY_MAJOR_VERSION < 3 - "cannot import name %.230s", PyString_AS_STRING(name)); - #else - "cannot import name %S", name); - #endif - } - return value; -} - -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { - PyObject *r; - if (!j) return NULL; - r = PyObject_GetItem(o, j); - Py_DECREF(j); - return r; -} -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck) { -#if CYTHON_COMPILING_IN_CPYTHON - if (wraparound & unlikely(i < 0)) i += PyList_GET_SIZE(o); - if ((!boundscheck) || likely((0 <= i) & (i < PyList_GET_SIZE(o)))) { - PyObject *r = PyList_GET_ITEM(o, i); - Py_INCREF(r); - return r; - } - return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); -#else - return PySequence_GetItem(o, i); -#endif -} -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck) { -#if CYTHON_COMPILING_IN_CPYTHON - if (wraparound & unlikely(i < 0)) i += PyTuple_GET_SIZE(o); - if ((!boundscheck) || likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) { - PyObject *r = PyTuple_GET_ITEM(o, i); - Py_INCREF(r); - return r; - } - return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); -#else - return PySequence_GetItem(o, i); -#endif -} -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, - int is_list, int wraparound, int boundscheck) { -#if CYTHON_COMPILING_IN_CPYTHON - if (is_list || PyList_CheckExact(o)) { - Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); - if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) { - PyObject *r = PyList_GET_ITEM(o, n); - Py_INCREF(r); - return r; - } - } - else if (PyTuple_CheckExact(o)) { - Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); - if ((!boundscheck) || likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) { - PyObject *r = PyTuple_GET_ITEM(o, n); - Py_INCREF(r); - return r; - } - } else { - PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence; - if (likely(m && m->sq_item)) { - if (wraparound && unlikely(i < 0) && likely(m->sq_length)) { - Py_ssize_t l = m->sq_length(o); - if (likely(l >= 0)) { - i += l; - } else { - if (PyErr_ExceptionMatches(PyExc_OverflowError)) - PyErr_Clear(); - else - return NULL; - } - } - return m->sq_item(o, i); - } - } -#else - if (is_list || PySequence_Check(o)) { - return PySequence_GetItem(o, i); - } -#endif - return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); -} - -static CYTHON_INLINE int __Pyx_IsLittleEndian(void) { - unsigned int n = 1; - return *(unsigned char*)(&n) != 0; -} -static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, - __Pyx_BufFmt_StackElem* stack, - __Pyx_TypeInfo* type) { - stack[0].field = &ctx->root; - stack[0].parent_offset = 0; - ctx->root.type = type; - ctx->root.name = "buffer dtype"; - ctx->root.offset = 0; - ctx->head = stack; - ctx->head->field = &ctx->root; - ctx->fmt_offset = 0; - ctx->head->parent_offset = 0; - ctx->new_packmode = '@'; - ctx->enc_packmode = '@'; - ctx->new_count = 1; - ctx->enc_count = 0; - ctx->enc_type = 0; - ctx->is_complex = 0; - ctx->is_valid_array = 0; - ctx->struct_alignment = 0; - while (type->typegroup == 'S') { - ++ctx->head; - ctx->head->field = type->fields; - ctx->head->parent_offset = 0; - type = type->fields->type; - } -} -static int __Pyx_BufFmt_ParseNumber(const char** ts) { - int count; - const char* t = *ts; - if (*t < '0' || *t > '9') { - return -1; - } else { - count = *t++ - '0'; - while (*t >= '0' && *t < '9') { - count *= 10; - count += *t++ - '0'; - } - } - *ts = t; - return count; -} -static int __Pyx_BufFmt_ExpectNumber(const char **ts) { - int number = __Pyx_BufFmt_ParseNumber(ts); - if (number == -1) /* First char was not a digit */ - PyErr_Format(PyExc_ValueError,\ - "Does not understand character buffer dtype format string ('%c')", **ts); - return number; -} -static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) { - PyErr_Format(PyExc_ValueError, - "Unexpected format string character: '%c'", ch); -} -static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) { - switch (ch) { - case 'c': return "'char'"; - case 'b': return "'signed char'"; - case 'B': return "'unsigned char'"; - case 'h': return "'short'"; - case 'H': return "'unsigned short'"; - case 'i': return "'int'"; - case 'I': return "'unsigned int'"; - case 'l': return "'long'"; - case 'L': return "'unsigned long'"; - case 'q': return "'long long'"; - case 'Q': return "'unsigned long long'"; - case 'f': return (is_complex ? "'complex float'" : "'float'"); - case 'd': return (is_complex ? "'complex double'" : "'double'"); - case 'g': return (is_complex ? "'complex long double'" : "'long double'"); - case 'T': return "a struct"; - case 'O': return "Python object"; - case 'P': return "a pointer"; - case 's': case 'p': return "a string"; - case 0: return "end"; - default: return "unparseable format string"; - } -} -static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) { - switch (ch) { - case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; - case 'h': case 'H': return 2; - case 'i': case 'I': case 'l': case 'L': return 4; - case 'q': case 'Q': return 8; - case 'f': return (is_complex ? 8 : 4); - case 'd': return (is_complex ? 16 : 8); - case 'g': { - PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g').."); - return 0; - } - case 'O': case 'P': return sizeof(void*); - default: - __Pyx_BufFmt_RaiseUnexpectedChar(ch); - return 0; - } -} -static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) { - switch (ch) { - case 'c': case 'b': case 'B': case 's': case 'p': return 1; - case 'h': case 'H': return sizeof(short); - case 'i': case 'I': return sizeof(int); - case 'l': case 'L': return sizeof(long); - #ifdef HAVE_LONG_LONG - case 'q': case 'Q': return sizeof(PY_LONG_LONG); - #endif - case 'f': return sizeof(float) * (is_complex ? 2 : 1); - case 'd': return sizeof(double) * (is_complex ? 2 : 1); - case 'g': return sizeof(long double) * (is_complex ? 2 : 1); - case 'O': case 'P': return sizeof(void*); - default: { - __Pyx_BufFmt_RaiseUnexpectedChar(ch); - return 0; - } - } -} -typedef struct { char c; short x; } __Pyx_st_short; -typedef struct { char c; int x; } __Pyx_st_int; -typedef struct { char c; long x; } __Pyx_st_long; -typedef struct { char c; float x; } __Pyx_st_float; -typedef struct { char c; double x; } __Pyx_st_double; -typedef struct { char c; long double x; } __Pyx_st_longdouble; -typedef struct { char c; void *x; } __Pyx_st_void_p; -#ifdef HAVE_LONG_LONG -typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong; -#endif -static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) { - switch (ch) { - case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; - case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short); - case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int); - case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long); -#ifdef HAVE_LONG_LONG - case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG); -#endif - case 'f': return sizeof(__Pyx_st_float) - sizeof(float); - case 'd': return sizeof(__Pyx_st_double) - sizeof(double); - case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double); - case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*); - default: - __Pyx_BufFmt_RaiseUnexpectedChar(ch); - return 0; - } -} -/* These are for computing the padding at the end of the struct to align - on the first member of the struct. This will probably the same as above, - but we don't have any guarantees. - */ -typedef struct { short x; char c; } __Pyx_pad_short; -typedef struct { int x; char c; } __Pyx_pad_int; -typedef struct { long x; char c; } __Pyx_pad_long; -typedef struct { float x; char c; } __Pyx_pad_float; -typedef struct { double x; char c; } __Pyx_pad_double; -typedef struct { long double x; char c; } __Pyx_pad_longdouble; -typedef struct { void *x; char c; } __Pyx_pad_void_p; -#ifdef HAVE_LONG_LONG -typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong; -#endif -static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) { - switch (ch) { - case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; - case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short); - case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int); - case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long); -#ifdef HAVE_LONG_LONG - case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG); -#endif - case 'f': return sizeof(__Pyx_pad_float) - sizeof(float); - case 'd': return sizeof(__Pyx_pad_double) - sizeof(double); - case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double); - case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*); - default: - __Pyx_BufFmt_RaiseUnexpectedChar(ch); - return 0; - } -} -static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) { - switch (ch) { - case 'c': - return 'H'; - case 'b': case 'h': case 'i': - case 'l': case 'q': case 's': case 'p': - return 'I'; - case 'B': case 'H': case 'I': case 'L': case 'Q': - return 'U'; - case 'f': case 'd': case 'g': - return (is_complex ? 'C' : 'R'); - case 'O': - return 'O'; - case 'P': - return 'P'; - default: { - __Pyx_BufFmt_RaiseUnexpectedChar(ch); - return 0; - } - } -} -static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) { - if (ctx->head == NULL || ctx->head->field == &ctx->root) { - const char* expected; - const char* quote; - if (ctx->head == NULL) { - expected = "end"; - quote = ""; - } else { - expected = ctx->head->field->type->name; - quote = "'"; - } - PyErr_Format(PyExc_ValueError, - "Buffer dtype mismatch, expected %s%s%s but got %s", - quote, expected, quote, - __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex)); - } else { - __Pyx_StructField* field = ctx->head->field; - __Pyx_StructField* parent = (ctx->head - 1)->field; - PyErr_Format(PyExc_ValueError, - "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'", - field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex), - parent->type->name, field->name); - } -} -static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) { - char group; - size_t size, offset, arraysize = 1; - if (ctx->enc_type == 0) return 0; - if (ctx->head->field->type->arraysize[0]) { - int i, ndim = 0; - if (ctx->enc_type == 's' || ctx->enc_type == 'p') { - ctx->is_valid_array = ctx->head->field->type->ndim == 1; - ndim = 1; - if (ctx->enc_count != ctx->head->field->type->arraysize[0]) { - PyErr_Format(PyExc_ValueError, - "Expected a dimension of size %zu, got %zu", - ctx->head->field->type->arraysize[0], ctx->enc_count); - return -1; - } - } - if (!ctx->is_valid_array) { - PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d", - ctx->head->field->type->ndim, ndim); - return -1; - } - for (i = 0; i < ctx->head->field->type->ndim; i++) { - arraysize *= ctx->head->field->type->arraysize[i]; - } - ctx->is_valid_array = 0; - ctx->enc_count = 1; - } - group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex); - do { - __Pyx_StructField* field = ctx->head->field; - __Pyx_TypeInfo* type = field->type; - if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') { - size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex); - } else { - size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex); - } - if (ctx->enc_packmode == '@') { - size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex); - size_t align_mod_offset; - if (align_at == 0) return -1; - align_mod_offset = ctx->fmt_offset % align_at; - if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset; - if (ctx->struct_alignment == 0) - ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type, - ctx->is_complex); - } - if (type->size != size || type->typegroup != group) { - if (type->typegroup == 'C' && type->fields != NULL) { - size_t parent_offset = ctx->head->parent_offset + field->offset; - ++ctx->head; - ctx->head->field = type->fields; - ctx->head->parent_offset = parent_offset; - continue; - } - if ((type->typegroup == 'H' || group == 'H') && type->size == size) { - } else { - __Pyx_BufFmt_RaiseExpected(ctx); - return -1; - } - } - offset = ctx->head->parent_offset + field->offset; - if (ctx->fmt_offset != offset) { - PyErr_Format(PyExc_ValueError, - "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected", - (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset); - return -1; - } - ctx->fmt_offset += size; - if (arraysize) - ctx->fmt_offset += (arraysize - 1) * size; - --ctx->enc_count; /* Consume from buffer string */ - while (1) { - if (field == &ctx->root) { - ctx->head = NULL; - if (ctx->enc_count != 0) { - __Pyx_BufFmt_RaiseExpected(ctx); - return -1; - } - break; /* breaks both loops as ctx->enc_count == 0 */ - } - ctx->head->field = ++field; - if (field->type == NULL) { - --ctx->head; - field = ctx->head->field; - continue; - } else if (field->type->typegroup == 'S') { - size_t parent_offset = ctx->head->parent_offset + field->offset; - if (field->type->fields->type == NULL) continue; /* empty struct */ - field = field->type->fields; - ++ctx->head; - ctx->head->field = field; - ctx->head->parent_offset = parent_offset; - break; - } else { - break; - } - } - } while (ctx->enc_count); - ctx->enc_type = 0; - ctx->is_complex = 0; - return 0; -} -static CYTHON_INLINE PyObject * -__pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp) -{ - const char *ts = *tsp; - int i = 0, number; - int ndim = ctx->head->field->type->ndim; -; - ++ts; - if (ctx->new_count != 1) { - PyErr_SetString(PyExc_ValueError, - "Cannot handle repeated arrays in format string"); - return NULL; - } - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - while (*ts && *ts != ')') { - switch (*ts) { - case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue; - default: break; /* not a 'break' in the loop */ - } - number = __Pyx_BufFmt_ExpectNumber(&ts); - if (number == -1) return NULL; - if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i]) - return PyErr_Format(PyExc_ValueError, - "Expected a dimension of size %zu, got %d", - ctx->head->field->type->arraysize[i], number); - if (*ts != ',' && *ts != ')') - return PyErr_Format(PyExc_ValueError, - "Expected a comma in format string, got '%c'", *ts); - if (*ts == ',') ts++; - i++; - } - if (i != ndim) - return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d", - ctx->head->field->type->ndim, i); - if (!*ts) { - PyErr_SetString(PyExc_ValueError, - "Unexpected end of format string, expected ')'"); - return NULL; - } - ctx->is_valid_array = 1; - ctx->new_count = 1; - *tsp = ++ts; - return Py_None; -} -static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) { - int got_Z = 0; - while (1) { - switch(*ts) { - case 0: - if (ctx->enc_type != 0 && ctx->head == NULL) { - __Pyx_BufFmt_RaiseExpected(ctx); - return NULL; - } - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - if (ctx->head != NULL) { - __Pyx_BufFmt_RaiseExpected(ctx); - return NULL; - } - return ts; - case ' ': - case 10: - case 13: - ++ts; - break; - case '<': - if (!__Pyx_IsLittleEndian()) { - PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler"); - return NULL; - } - ctx->new_packmode = '='; - ++ts; - break; - case '>': - case '!': - if (__Pyx_IsLittleEndian()) { - PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler"); - return NULL; - } - ctx->new_packmode = '='; - ++ts; - break; - case '=': - case '@': - case '^': - ctx->new_packmode = *ts++; - break; - case 'T': /* substruct */ - { - const char* ts_after_sub; - size_t i, struct_count = ctx->new_count; - size_t struct_alignment = ctx->struct_alignment; - ctx->new_count = 1; - ++ts; - if (*ts != '{') { - PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'"); - return NULL; - } - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - ctx->enc_type = 0; /* Erase processed last struct element */ - ctx->enc_count = 0; - ctx->struct_alignment = 0; - ++ts; - ts_after_sub = ts; - for (i = 0; i != struct_count; ++i) { - ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts); - if (!ts_after_sub) return NULL; - } - ts = ts_after_sub; - if (struct_alignment) ctx->struct_alignment = struct_alignment; - } - break; - case '}': /* end of substruct; either repeat or move on */ - { - size_t alignment = ctx->struct_alignment; - ++ts; - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - ctx->enc_type = 0; /* Erase processed last struct element */ - if (alignment && ctx->fmt_offset % alignment) { - ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment); - } - } - return ts; - case 'x': - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - ctx->fmt_offset += ctx->new_count; - ctx->new_count = 1; - ctx->enc_count = 0; - ctx->enc_type = 0; - ctx->enc_packmode = ctx->new_packmode; - ++ts; - break; - case 'Z': - got_Z = 1; - ++ts; - if (*ts != 'f' && *ts != 'd' && *ts != 'g') { - __Pyx_BufFmt_RaiseUnexpectedChar('Z'); - return NULL; - } /* fall through */ - case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I': - case 'l': case 'L': case 'q': case 'Q': - case 'f': case 'd': case 'g': - case 'O': case 's': case 'p': - if (ctx->enc_type == *ts && got_Z == ctx->is_complex && - ctx->enc_packmode == ctx->new_packmode) { - ctx->enc_count += ctx->new_count; - } else { - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - ctx->enc_count = ctx->new_count; - ctx->enc_packmode = ctx->new_packmode; - ctx->enc_type = *ts; - ctx->is_complex = got_Z; - } - ++ts; - ctx->new_count = 1; - got_Z = 0; - break; - case ':': - ++ts; - while(*ts != ':') ++ts; - ++ts; - break; - case '(': - if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL; - break; - default: - { - int number = __Pyx_BufFmt_ExpectNumber(&ts); - if (number == -1) return NULL; - ctx->new_count = (size_t)number; - } - } - } -} -static CYTHON_INLINE void __Pyx_ZeroBuffer(Py_buffer* buf) { - buf->buf = NULL; - buf->obj = NULL; - buf->strides = __Pyx_zeros; - buf->shape = __Pyx_zeros; - buf->suboffsets = __Pyx_minusones; -} -static CYTHON_INLINE int __Pyx_GetBufferAndValidate( - Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags, - int nd, int cast, __Pyx_BufFmt_StackElem* stack) -{ - if (obj == Py_None || obj == NULL) { - __Pyx_ZeroBuffer(buf); - return 0; - } - buf->buf = NULL; - if (__Pyx_GetBuffer(obj, buf, flags) == -1) goto fail; - if (buf->ndim != nd) { - PyErr_Format(PyExc_ValueError, - "Buffer has wrong number of dimensions (expected %d, got %d)", - nd, buf->ndim); - goto fail; - } - if (!cast) { - __Pyx_BufFmt_Context ctx; - __Pyx_BufFmt_Init(&ctx, stack, dtype); - if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail; - } - if ((unsigned)buf->itemsize != dtype->size) { - PyErr_Format(PyExc_ValueError, - "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)", - buf->itemsize, (buf->itemsize > 1) ? "s" : "", - dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : ""); - goto fail; - } - if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones; - return 0; -fail:; - __Pyx_ZeroBuffer(buf); - return -1; -} -static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { - if (info->buf == NULL) return; - if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL; - __Pyx_ReleaseBuffer(info); -} - -static CYTHON_INLINE int __Pyx_PyStr_Tailmatch(PyObject* self, PyObject* arg, Py_ssize_t start, - Py_ssize_t end, int direction) -{ - if (PY_MAJOR_VERSION < 3) - return __Pyx_PyBytes_Tailmatch(self, arg, start, end, direction); - else - return __Pyx_PyUnicode_Tailmatch(self, arg, start, end, direction); -} - -static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { - if (unlikely(!type)) { - PyErr_SetString(PyExc_SystemError, "Missing type object"); - return 0; - } - if (likely(PyObject_TypeCheck(obj, type))) - return 1; - PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", - Py_TYPE(obj)->tp_name, type->tp_name); - return 0; -} - -static void __Pyx_RaiseBufferFallbackError(void) { - PyErr_SetString(PyExc_ValueError, - "Buffer acquisition failed on assignment; and then reacquiring the old buffer failed too!"); -} - -static void __Pyx_RaiseArgtupleInvalid( - const char* func_name, - int exact, - Py_ssize_t num_min, - Py_ssize_t num_max, - Py_ssize_t num_found) -{ - Py_ssize_t num_expected; - const char *more_or_less; - if (num_found < num_min) { - num_expected = num_min; - more_or_less = "at least"; - } else { - num_expected = num_max; - more_or_less = "at most"; - } - if (exact) { - more_or_less = "exactly"; - } - PyErr_Format(PyExc_TypeError, - "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", - func_name, more_or_less, num_expected, - (num_expected == 1) ? "" : "s", num_found); -} - -static void __Pyx_RaiseDoubleKeywordsError( - const char* func_name, - PyObject* kw_name) -{ - PyErr_Format(PyExc_TypeError, - #if PY_MAJOR_VERSION >= 3 - "%s() got multiple values for keyword argument '%U'", func_name, kw_name); - #else - "%s() got multiple values for keyword argument '%s'", func_name, - PyString_AsString(kw_name)); - #endif -} - -static int __Pyx_ParseOptionalKeywords( - PyObject *kwds, - PyObject **argnames[], - PyObject *kwds2, - PyObject *values[], - Py_ssize_t num_pos_args, - const char* function_name) -{ - PyObject *key = 0, *value = 0; - Py_ssize_t pos = 0; - PyObject*** name; - PyObject*** first_kw_arg = argnames + num_pos_args; - while (PyDict_Next(kwds, &pos, &key, &value)) { - name = first_kw_arg; - while (*name && (**name != key)) name++; - if (*name) { - values[name-argnames] = value; - continue; - } - name = first_kw_arg; - #if PY_MAJOR_VERSION < 3 - if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) { - while (*name) { - if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) - && _PyString_Eq(**name, key)) { - values[name-argnames] = value; - break; - } - name++; - } - if (*name) continue; - else { - PyObject*** argname = argnames; - while (argname != first_kw_arg) { - if ((**argname == key) || ( - (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) - && _PyString_Eq(**argname, key))) { - goto arg_passed_twice; - } - argname++; - } - } - } else - #endif - if (likely(PyUnicode_Check(key))) { - while (*name) { - int cmp = (**name == key) ? 0 : - #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 - (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : - #endif - PyUnicode_Compare(**name, key); - if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; - if (cmp == 0) { - values[name-argnames] = value; - break; - } - name++; - } - if (*name) continue; - else { - PyObject*** argname = argnames; - while (argname != first_kw_arg) { - int cmp = (**argname == key) ? 0 : - #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 - (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : - #endif - PyUnicode_Compare(**argname, key); - if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; - if (cmp == 0) goto arg_passed_twice; - argname++; - } - } - } else - goto invalid_keyword_type; - if (kwds2) { - if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; - } else { - goto invalid_keyword; - } - } - return 0; -arg_passed_twice: - __Pyx_RaiseDoubleKeywordsError(function_name, key); - goto bad; -invalid_keyword_type: - PyErr_Format(PyExc_TypeError, - "%.200s() keywords must be strings", function_name); - goto bad; -invalid_keyword: - PyErr_Format(PyExc_TypeError, - #if PY_MAJOR_VERSION < 3 - "%.200s() got an unexpected keyword argument '%.200s'", - function_name, PyString_AsString(key)); - #else - "%s() got an unexpected keyword argument '%U'", - function_name, key); - #endif -bad: - return -1; -} - -static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { - PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); -} - -#if PY_MAJOR_VERSION < 3 -static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) { - #if PY_VERSION_HEX >= 0x02060000 - if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags); - #endif - if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags); - #if PY_VERSION_HEX < 0x02060000 - if (obj->ob_type->tp_dict) { - PyObject *getbuffer_cobj = PyObject_GetItem( - obj->ob_type->tp_dict, __pyx_n_s_pyx_getbuffer); - if (getbuffer_cobj) { - getbufferproc func = (getbufferproc) PyCObject_AsVoidPtr(getbuffer_cobj); - Py_DECREF(getbuffer_cobj); - if (!func) - goto fail; - return func(obj, view, flags); - } else { - PyErr_Clear(); - } - } - #endif - PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name); -#if PY_VERSION_HEX < 0x02060000 -fail: -#endif - return -1; -} -static void __Pyx_ReleaseBuffer(Py_buffer *view) { - PyObject *obj = view->obj; - if (!obj) return; - #if PY_VERSION_HEX >= 0x02060000 - if (PyObject_CheckBuffer(obj)) { - PyBuffer_Release(view); - return; - } - #endif - if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) { __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view); return; } - #if PY_VERSION_HEX < 0x02060000 - if (obj->ob_type->tp_dict) { - PyObject *releasebuffer_cobj = PyObject_GetItem( - obj->ob_type->tp_dict, __pyx_n_s_pyx_releasebuffer); - if (releasebuffer_cobj) { - releasebufferproc func = (releasebufferproc) PyCObject_AsVoidPtr(releasebuffer_cobj); - Py_DECREF(releasebuffer_cobj); - if (!func) - goto fail; - func(obj, view); - return; - } else { - PyErr_Clear(); - } - } - #endif - goto nofail; -#if PY_VERSION_HEX < 0x02060000 -fail: -#endif - PyErr_WriteUnraisable(obj); -nofail: - Py_DECREF(obj); - view->obj = NULL; -} -#endif /* PY_MAJOR_VERSION < 3 */ - - - static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { - PyObject *empty_list = 0; - PyObject *module = 0; - PyObject *global_dict = 0; - PyObject *empty_dict = 0; - PyObject *list; - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_import; - py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); - if (!py_import) - goto bad; - #endif - if (from_list) - list = from_list; - else { - empty_list = PyList_New(0); - if (!empty_list) - goto bad; - list = empty_list; - } - global_dict = PyModule_GetDict(__pyx_m); - if (!global_dict) - goto bad; - empty_dict = PyDict_New(); - if (!empty_dict) - goto bad; - #if PY_VERSION_HEX >= 0x02050000 - { - #if PY_MAJOR_VERSION >= 3 - if (level == -1) { - if (strchr(__Pyx_MODULE_NAME, '.')) { - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_level = PyInt_FromLong(1); - if (!py_level) - goto bad; - module = PyObject_CallFunctionObjArgs(py_import, - name, global_dict, empty_dict, list, py_level, NULL); - Py_DECREF(py_level); - #else - module = PyImport_ImportModuleLevelObject( - name, global_dict, empty_dict, list, 1); - #endif - if (!module) { - if (!PyErr_ExceptionMatches(PyExc_ImportError)) - goto bad; - PyErr_Clear(); - } - } - level = 0; /* try absolute import on failure */ - } - #endif - if (!module) { - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_level = PyInt_FromLong(level); - if (!py_level) - goto bad; - module = PyObject_CallFunctionObjArgs(py_import, - name, global_dict, empty_dict, list, py_level, NULL); - Py_DECREF(py_level); - #else - module = PyImport_ImportModuleLevelObject( - name, global_dict, empty_dict, list, level); - #endif - } - } - #else - if (level>0) { - PyErr_SetString(PyExc_RuntimeError, "Relative import is not supported for Python <=2.4."); - goto bad; - } - module = PyObject_CallFunctionObjArgs(py_import, - name, global_dict, empty_dict, list, NULL); - #endif -bad: - #if PY_VERSION_HEX < 0x03030000 - Py_XDECREF(py_import); - #endif - Py_XDECREF(empty_list); - Py_XDECREF(empty_dict); - return module; -} - -#if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION < 3 -static PyObject *__Pyx_GetStdout(void) { - PyObject *f = PySys_GetObject((char *)"stdout"); - if (!f) { - PyErr_SetString(PyExc_RuntimeError, "lost sys.stdout"); - } - return f; -} -static int __Pyx_Print(PyObject* f, PyObject *arg_tuple, int newline) { - int i; - if (!f) { - if (!(f = __Pyx_GetStdout())) - return -1; - } - Py_INCREF(f); - for (i=0; i < PyTuple_GET_SIZE(arg_tuple); i++) { - PyObject* v; - if (PyFile_SoftSpace(f, 1)) { - if (PyFile_WriteString(" ", f) < 0) - goto error; - } - v = PyTuple_GET_ITEM(arg_tuple, i); - if (PyFile_WriteObject(v, f, Py_PRINT_RAW) < 0) - goto error; - if (PyString_Check(v)) { - char *s = PyString_AsString(v); - Py_ssize_t len = PyString_Size(v); - if (len > 0) { - switch (s[len-1]) { - case ' ': break; - case '\f': case '\r': case '\n': case '\t': case '\v': - PyFile_SoftSpace(f, 0); - break; - default: break; - } - } - } - } - if (newline) { - if (PyFile_WriteString("\n", f) < 0) - goto error; - PyFile_SoftSpace(f, 0); - } - Py_DECREF(f); - return 0; -error: - Py_DECREF(f); - return -1; -} -#else /* Python 3 has a print function */ -static int __Pyx_Print(PyObject* stream, PyObject *arg_tuple, int newline) { - PyObject* kwargs = 0; - PyObject* result = 0; - PyObject* end_string; - if (unlikely(!__pyx_print)) { - __pyx_print = PyObject_GetAttr(__pyx_b, __pyx_n_s_print); - if (!__pyx_print) - return -1; - } - if (stream) { - kwargs = PyDict_New(); - if (unlikely(!kwargs)) - return -1; - if (unlikely(PyDict_SetItem(kwargs, __pyx_n_s_file, stream) < 0)) - goto bad; - if (!newline) { - end_string = PyUnicode_FromStringAndSize(" ", 1); - if (unlikely(!end_string)) - goto bad; - if (PyDict_SetItem(kwargs, __pyx_n_s_end, end_string) < 0) { - Py_DECREF(end_string); - goto bad; - } - Py_DECREF(end_string); - } - } else if (!newline) { - if (unlikely(!__pyx_print_kwargs)) { - __pyx_print_kwargs = PyDict_New(); - if (unlikely(!__pyx_print_kwargs)) - return -1; - end_string = PyUnicode_FromStringAndSize(" ", 1); - if (unlikely(!end_string)) - return -1; - if (PyDict_SetItem(__pyx_print_kwargs, __pyx_n_s_end, end_string) < 0) { - Py_DECREF(end_string); - return -1; - } - Py_DECREF(end_string); - } - kwargs = __pyx_print_kwargs; - } - result = PyObject_Call(__pyx_print, arg_tuple, kwargs); - if (unlikely(kwargs) && (kwargs != __pyx_print_kwargs)) - Py_DECREF(kwargs); - if (!result) - return -1; - Py_DECREF(result); - return 0; -bad: - if (kwargs != __pyx_print_kwargs) - Py_XDECREF(kwargs); - return -1; -} -#endif - -#if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION < 3 -static int __Pyx_PrintOne(PyObject* f, PyObject *o) { - if (!f) { - if (!(f = __Pyx_GetStdout())) - return -1; - } - Py_INCREF(f); - if (PyFile_SoftSpace(f, 0)) { - if (PyFile_WriteString(" ", f) < 0) - goto error; - } - if (PyFile_WriteObject(o, f, Py_PRINT_RAW) < 0) - goto error; - if (PyFile_WriteString("\n", f) < 0) - goto error; - Py_DECREF(f); - return 0; -error: - Py_DECREF(f); - return -1; - /* the line below is just to avoid C compiler - * warnings about unused functions */ - return __Pyx_Print(f, NULL, 0); -} -#else /* Python 3 has a print function */ -static int __Pyx_PrintOne(PyObject* stream, PyObject *o) { - int res; - PyObject* arg_tuple = PyTuple_Pack(1, o); - if (unlikely(!arg_tuple)) - return -1; - res = __Pyx_Print(stream, arg_tuple, 1); - Py_DECREF(arg_tuple); - return res; -} -#endif - -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { - const long neg_one = (long) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; - if (is_unsigned) { - if (sizeof(long) < sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(long) <= sizeof(unsigned long)) { - return PyLong_FromUnsignedLong((unsigned long) value); - } else if (sizeof(long) <= sizeof(unsigned long long)) { - return PyLong_FromUnsignedLongLong((unsigned long long) value); - } - } else { - if (sizeof(long) <= sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(long) <= sizeof(long long)) { - return PyLong_FromLongLong((long long) value); - } - } - { - int one = 1; int little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&value; - return _PyLong_FromByteArray(bytes, sizeof(long), - little, !is_unsigned); - } -} - -#define __PYX_VERIFY_RETURN_INT(target_type, func_type, func) \ - { \ - func_type value = func(x); \ - if (sizeof(target_type) < sizeof(func_type)) { \ - if (unlikely(value != (func_type) (target_type) value)) { \ - func_type zero = 0; \ - PyErr_SetString(PyExc_OverflowError, \ - (is_unsigned && unlikely(value < zero)) ? \ - "can't convert negative value to " #target_type : \ - "value too large to convert to " #target_type); \ - return (target_type) -1; \ - } \ - } \ - return (target_type) value; \ - } - -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - #include "longintrepr.h" - #endif -#endif -static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { - const int neg_one = (int) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; -#if PY_MAJOR_VERSION < 3 - if (likely(PyInt_Check(x))) { - if (sizeof(int) < sizeof(long)) { - __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG) - } else { - long val = PyInt_AS_LONG(x); - if (is_unsigned && unlikely(val < 0)) { - PyErr_SetString(PyExc_OverflowError, - "can't convert negative value to int"); - return (int) -1; - } - return (int) val; - } - } else -#endif - if (likely(PyLong_Check(x))) { - if (is_unsigned) { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - if (sizeof(digit) <= sizeof(int)) { - switch (Py_SIZE(x)) { - case 0: return 0; - case 1: return (int) ((PyLongObject*)x)->ob_digit[0]; - } - } - #endif -#endif - if (unlikely(Py_SIZE(x) < 0)) { - PyErr_SetString(PyExc_OverflowError, - "can't convert negative value to int"); - return (int) -1; - } - if (sizeof(int) <= sizeof(unsigned long)) { - __PYX_VERIFY_RETURN_INT(int, unsigned long, PyLong_AsUnsignedLong) - } else if (sizeof(int) <= sizeof(unsigned long long)) { - __PYX_VERIFY_RETURN_INT(int, unsigned long long, PyLong_AsUnsignedLongLong) - } - } else { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - if (sizeof(digit) <= sizeof(int)) { - switch (Py_SIZE(x)) { - case 0: return 0; - case 1: return +(int) ((PyLongObject*)x)->ob_digit[0]; - case -1: return -(int) ((PyLongObject*)x)->ob_digit[0]; - } - } - #endif -#endif - if (sizeof(int) <= sizeof(long)) { - __PYX_VERIFY_RETURN_INT(int, long, PyLong_AsLong) - } else if (sizeof(int) <= sizeof(long long)) { - __PYX_VERIFY_RETURN_INT(int, long long, PyLong_AsLongLong) - } - } - { -#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) - PyErr_SetString(PyExc_RuntimeError, - "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); -#else - int val; - PyObject *v = __Pyx_PyNumber_Int(x); - #if PY_MAJOR_VERSION < 3 - if (likely(v) && !PyLong_Check(v)) { - PyObject *tmp = v; - v = PyNumber_Long(tmp); - Py_DECREF(tmp); - } - #endif - if (likely(v)) { - int one = 1; int is_little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&val; - int ret = _PyLong_AsByteArray((PyLongObject *)v, - bytes, sizeof(val), - is_little, !is_unsigned); - Py_DECREF(v); - if (likely(!ret)) - return val; - } -#endif - return (int) -1; - } - } else { - int val; - PyObject *tmp = __Pyx_PyNumber_Int(x); - if (!tmp) return (int) -1; - val = __Pyx_PyInt_As_int(tmp); - Py_DECREF(tmp); - return val; - } -} - -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { - const int neg_one = (int) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; - if (is_unsigned) { - if (sizeof(int) < sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(int) <= sizeof(unsigned long)) { - return PyLong_FromUnsignedLong((unsigned long) value); - } else if (sizeof(int) <= sizeof(unsigned long long)) { - return PyLong_FromUnsignedLongLong((unsigned long long) value); - } - } else { - if (sizeof(int) <= sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(int) <= sizeof(long long)) { - return PyLong_FromLongLong((long long) value); - } - } - { - int one = 1; int little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&value; - return _PyLong_FromByteArray(bytes, sizeof(int), - little, !is_unsigned); - } -} - -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { - return ::std::complex< float >(x, y); - } - #else - static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { - return x + y*(__pyx_t_float_complex)_Complex_I; - } - #endif -#else - static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { - __pyx_t_float_complex z; - z.real = x; - z.imag = y; - return z; - } -#endif - -#if CYTHON_CCOMPLEX -#else - static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - return (a.real == b.real) && (a.imag == b.imag); - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - z.real = a.real + b.real; - z.imag = a.imag + b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - z.real = a.real - b.real; - z.imag = a.imag - b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - z.real = a.real * b.real - a.imag * b.imag; - z.imag = a.real * b.imag + a.imag * b.real; - return z; - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - float denom = b.real * b.real + b.imag * b.imag; - z.real = (a.real * b.real + a.imag * b.imag) / denom; - z.imag = (a.imag * b.real - a.real * b.imag) / denom; - return z; - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex a) { - __pyx_t_float_complex z; - z.real = -a.real; - z.imag = -a.imag; - return z; - } - static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex a) { - return (a.real == 0) && (a.imag == 0); - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex a) { - __pyx_t_float_complex z; - z.real = a.real; - z.imag = -a.imag; - return z; - } - #if 1 - static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex z) { - #if !defined(HAVE_HYPOT) || defined(_MSC_VER) - return sqrtf(z.real*z.real + z.imag*z.imag); - #else - return hypotf(z.real, z.imag); - #endif - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - float r, lnr, theta, z_r, z_theta; - if (b.imag == 0 && b.real == (int)b.real) { - if (b.real < 0) { - float denom = a.real * a.real + a.imag * a.imag; - a.real = a.real / denom; - a.imag = -a.imag / denom; - b.real = -b.real; - } - switch ((int)b.real) { - case 0: - z.real = 1; - z.imag = 0; - return z; - case 1: - return a; - case 2: - z = __Pyx_c_prodf(a, a); - return __Pyx_c_prodf(a, a); - case 3: - z = __Pyx_c_prodf(a, a); - return __Pyx_c_prodf(z, a); - case 4: - z = __Pyx_c_prodf(a, a); - return __Pyx_c_prodf(z, z); - } - } - if (a.imag == 0) { - if (a.real == 0) { - return a; - } - r = a.real; - theta = 0; - } else { - r = __Pyx_c_absf(a); - theta = atan2f(a.imag, a.real); - } - lnr = logf(r); - z_r = expf(lnr * b.real - theta * b.imag); - z_theta = theta * b.real + lnr * b.imag; - z.real = z_r * cosf(z_theta); - z.imag = z_r * sinf(z_theta); - return z; - } - #endif -#endif - -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { - return ::std::complex< double >(x, y); - } - #else - static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { - return x + y*(__pyx_t_double_complex)_Complex_I; - } - #endif -#else - static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { - __pyx_t_double_complex z; - z.real = x; - z.imag = y; - return z; - } -#endif - -#if CYTHON_CCOMPLEX -#else - static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex a, __pyx_t_double_complex b) { - return (a.real == b.real) && (a.imag == b.imag); - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - z.real = a.real + b.real; - z.imag = a.imag + b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - z.real = a.real - b.real; - z.imag = a.imag - b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - z.real = a.real * b.real - a.imag * b.imag; - z.imag = a.real * b.imag + a.imag * b.real; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - double denom = b.real * b.real + b.imag * b.imag; - z.real = (a.real * b.real + a.imag * b.imag) / denom; - z.imag = (a.imag * b.real - a.real * b.imag) / denom; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex a) { - __pyx_t_double_complex z; - z.real = -a.real; - z.imag = -a.imag; - return z; - } - static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex a) { - return (a.real == 0) && (a.imag == 0); - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex a) { - __pyx_t_double_complex z; - z.real = a.real; - z.imag = -a.imag; - return z; - } - #if 1 - static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex z) { - #if !defined(HAVE_HYPOT) || defined(_MSC_VER) - return sqrt(z.real*z.real + z.imag*z.imag); - #else - return hypot(z.real, z.imag); - #endif - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - double r, lnr, theta, z_r, z_theta; - if (b.imag == 0 && b.real == (int)b.real) { - if (b.real < 0) { - double denom = a.real * a.real + a.imag * a.imag; - a.real = a.real / denom; - a.imag = -a.imag / denom; - b.real = -b.real; - } - switch ((int)b.real) { - case 0: - z.real = 1; - z.imag = 0; - return z; - case 1: - return a; - case 2: - z = __Pyx_c_prod(a, a); - return __Pyx_c_prod(a, a); - case 3: - z = __Pyx_c_prod(a, a); - return __Pyx_c_prod(z, a); - case 4: - z = __Pyx_c_prod(a, a); - return __Pyx_c_prod(z, z); - } - } - if (a.imag == 0) { - if (a.real == 0) { - return a; - } - r = a.real; - theta = 0; - } else { - r = __Pyx_c_abs(a); - theta = atan2(a.imag, a.real); - } - lnr = log(r); - z_r = exp(lnr * b.real - theta * b.imag); - z_theta = theta * b.real + lnr * b.imag; - z.real = z_r * cos(z_theta); - z.imag = z_r * sin(z_theta); - return z; - } - #endif -#endif - -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - #include "longintrepr.h" - #endif -#endif -static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { - const long neg_one = (long) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; -#if PY_MAJOR_VERSION < 3 - if (likely(PyInt_Check(x))) { - if (sizeof(long) < sizeof(long)) { - __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG) - } else { - long val = PyInt_AS_LONG(x); - if (is_unsigned && unlikely(val < 0)) { - PyErr_SetString(PyExc_OverflowError, - "can't convert negative value to long"); - return (long) -1; - } - return (long) val; - } - } else -#endif - if (likely(PyLong_Check(x))) { - if (is_unsigned) { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - if (sizeof(digit) <= sizeof(long)) { - switch (Py_SIZE(x)) { - case 0: return 0; - case 1: return (long) ((PyLongObject*)x)->ob_digit[0]; - } - } - #endif -#endif - if (unlikely(Py_SIZE(x) < 0)) { - PyErr_SetString(PyExc_OverflowError, - "can't convert negative value to long"); - return (long) -1; - } - if (sizeof(long) <= sizeof(unsigned long)) { - __PYX_VERIFY_RETURN_INT(long, unsigned long, PyLong_AsUnsignedLong) - } else if (sizeof(long) <= sizeof(unsigned long long)) { - __PYX_VERIFY_RETURN_INT(long, unsigned long long, PyLong_AsUnsignedLongLong) - } - } else { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - if (sizeof(digit) <= sizeof(long)) { - switch (Py_SIZE(x)) { - case 0: return 0; - case 1: return +(long) ((PyLongObject*)x)->ob_digit[0]; - case -1: return -(long) ((PyLongObject*)x)->ob_digit[0]; - } - } - #endif -#endif - if (sizeof(long) <= sizeof(long)) { - __PYX_VERIFY_RETURN_INT(long, long, PyLong_AsLong) - } else if (sizeof(long) <= sizeof(long long)) { - __PYX_VERIFY_RETURN_INT(long, long long, PyLong_AsLongLong) - } - } - { -#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) - PyErr_SetString(PyExc_RuntimeError, - "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); -#else - long val; - PyObject *v = __Pyx_PyNumber_Int(x); - #if PY_MAJOR_VERSION < 3 - if (likely(v) && !PyLong_Check(v)) { - PyObject *tmp = v; - v = PyNumber_Long(tmp); - Py_DECREF(tmp); - } - #endif - if (likely(v)) { - int one = 1; int is_little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&val; - int ret = _PyLong_AsByteArray((PyLongObject *)v, - bytes, sizeof(val), - is_little, !is_unsigned); - Py_DECREF(v); - if (likely(!ret)) - return val; - } -#endif - return (long) -1; - } - } else { - long val; - PyObject *tmp = __Pyx_PyNumber_Int(x); - if (!tmp) return (long) -1; - val = __Pyx_PyInt_As_long(tmp); - Py_DECREF(tmp); - return val; - } -} - -static int __Pyx_check_binary_version(void) { - char ctversion[4], rtversion[4]; - PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); - PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); - if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) { - char message[200]; - PyOS_snprintf(message, sizeof(message), - "compiletime version %s of module '%.100s' " - "does not match runtime version %s", - ctversion, __Pyx_MODULE_NAME, rtversion); - #if PY_VERSION_HEX < 0x02050000 - return PyErr_Warn(NULL, message); - #else - return PyErr_WarnEx(NULL, message, 1); - #endif - } - return 0; -} - -#ifndef __PYX_HAVE_RT_ImportModule -#define __PYX_HAVE_RT_ImportModule -static PyObject *__Pyx_ImportModule(const char *name) { - PyObject *py_name = 0; - PyObject *py_module = 0; - py_name = __Pyx_PyIdentifier_FromString(name); - if (!py_name) - goto bad; - py_module = PyImport_Import(py_name); - Py_DECREF(py_name); - return py_module; -bad: - Py_XDECREF(py_name); - return 0; -} -#endif - -#ifndef __PYX_HAVE_RT_ImportType -#define __PYX_HAVE_RT_ImportType -static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, - size_t size, int strict) -{ - PyObject *py_module = 0; - PyObject *result = 0; - PyObject *py_name = 0; - char warning[200]; - Py_ssize_t basicsize; -#ifdef Py_LIMITED_API - PyObject *py_basicsize; -#endif - py_module = __Pyx_ImportModule(module_name); - if (!py_module) - goto bad; - py_name = __Pyx_PyIdentifier_FromString(class_name); - if (!py_name) - goto bad; - result = PyObject_GetAttr(py_module, py_name); - Py_DECREF(py_name); - py_name = 0; - Py_DECREF(py_module); - py_module = 0; - if (!result) - goto bad; - if (!PyType_Check(result)) { - PyErr_Format(PyExc_TypeError, - "%.200s.%.200s is not a type object", - module_name, class_name); - goto bad; - } -#ifndef Py_LIMITED_API - basicsize = ((PyTypeObject *)result)->tp_basicsize; -#else - py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); - if (!py_basicsize) - goto bad; - basicsize = PyLong_AsSsize_t(py_basicsize); - Py_DECREF(py_basicsize); - py_basicsize = 0; - if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) - goto bad; -#endif - if (!strict && (size_t)basicsize > size) { - PyOS_snprintf(warning, sizeof(warning), - "%s.%s size changed, may indicate binary incompatibility", - module_name, class_name); - #if PY_VERSION_HEX < 0x02050000 - if (PyErr_Warn(NULL, warning) < 0) goto bad; - #else - if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; - #endif - } - else if ((size_t)basicsize != size) { - PyErr_Format(PyExc_ValueError, - "%.200s.%.200s has the wrong size, try recompiling", - module_name, class_name); - goto bad; - } - return (PyTypeObject *)result; -bad: - Py_XDECREF(py_module); - Py_XDECREF(result); - return NULL; -} -#endif - -static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { - int start = 0, mid = 0, end = count - 1; - if (end >= 0 && code_line > entries[end].code_line) { - return count; - } - while (start < end) { - mid = (start + end) / 2; - if (code_line < entries[mid].code_line) { - end = mid; - } else if (code_line > entries[mid].code_line) { - start = mid + 1; - } else { - return mid; - } - } - if (code_line <= entries[mid].code_line) { - return mid; - } else { - return mid + 1; - } -} -static PyCodeObject *__pyx_find_code_object(int code_line) { - PyCodeObject* code_object; - int pos; - if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { - return NULL; - } - pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); - if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { - return NULL; - } - code_object = __pyx_code_cache.entries[pos].code_object; - Py_INCREF(code_object); - return code_object; -} -static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { - int pos, i; - __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; - if (unlikely(!code_line)) { - return; - } - if (unlikely(!entries)) { - entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); - if (likely(entries)) { - __pyx_code_cache.entries = entries; - __pyx_code_cache.max_count = 64; - __pyx_code_cache.count = 1; - entries[0].code_line = code_line; - entries[0].code_object = code_object; - Py_INCREF(code_object); - } - return; - } - pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); - if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { - PyCodeObject* tmp = entries[pos].code_object; - entries[pos].code_object = code_object; - Py_DECREF(tmp); - return; - } - if (__pyx_code_cache.count == __pyx_code_cache.max_count) { - int new_max = __pyx_code_cache.max_count + 64; - entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( - __pyx_code_cache.entries, new_max*sizeof(__Pyx_CodeObjectCacheEntry)); - if (unlikely(!entries)) { - return; - } - __pyx_code_cache.entries = entries; - __pyx_code_cache.max_count = new_max; - } - for (i=__pyx_code_cache.count; i>pos; i--) { - entries[i] = entries[i-1]; - } - entries[pos].code_line = code_line; - entries[pos].code_object = code_object; - __pyx_code_cache.count++; - Py_INCREF(code_object); -} - -#include "compile.h" -#include "frameobject.h" -#include "traceback.h" -static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( - const char *funcname, int c_line, - int py_line, const char *filename) { - PyCodeObject *py_code = 0; - PyObject *py_srcfile = 0; - PyObject *py_funcname = 0; - #if PY_MAJOR_VERSION < 3 - py_srcfile = PyString_FromString(filename); - #else - py_srcfile = PyUnicode_FromString(filename); - #endif - if (!py_srcfile) goto bad; - if (c_line) { - #if PY_MAJOR_VERSION < 3 - py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); - #else - py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); - #endif - } - else { - #if PY_MAJOR_VERSION < 3 - py_funcname = PyString_FromString(funcname); - #else - py_funcname = PyUnicode_FromString(funcname); - #endif - } - if (!py_funcname) goto bad; - py_code = __Pyx_PyCode_New( - 0, /*int argcount,*/ - 0, /*int kwonlyargcount,*/ - 0, /*int nlocals,*/ - 0, /*int stacksize,*/ - 0, /*int flags,*/ - __pyx_empty_bytes, /*PyObject *code,*/ - __pyx_empty_tuple, /*PyObject *consts,*/ - __pyx_empty_tuple, /*PyObject *names,*/ - __pyx_empty_tuple, /*PyObject *varnames,*/ - __pyx_empty_tuple, /*PyObject *freevars,*/ - __pyx_empty_tuple, /*PyObject *cellvars,*/ - py_srcfile, /*PyObject *filename,*/ - py_funcname, /*PyObject *name,*/ - py_line, /*int firstlineno,*/ - __pyx_empty_bytes /*PyObject *lnotab*/ - ); - Py_DECREF(py_srcfile); - Py_DECREF(py_funcname); - return py_code; -bad: - Py_XDECREF(py_srcfile); - Py_XDECREF(py_funcname); - return NULL; -} -static void __Pyx_AddTraceback(const char *funcname, int c_line, - int py_line, const char *filename) { - PyCodeObject *py_code = 0; - PyObject *py_globals = 0; - PyFrameObject *py_frame = 0; - py_code = __pyx_find_code_object(c_line ? c_line : py_line); - if (!py_code) { - py_code = __Pyx_CreateCodeObjectForTraceback( - funcname, c_line, py_line, filename); - if (!py_code) goto bad; - __pyx_insert_code_object(c_line ? c_line : py_line, py_code); - } - py_globals = PyModule_GetDict(__pyx_m); - if (!py_globals) goto bad; - py_frame = PyFrame_New( - PyThreadState_GET(), /*PyThreadState *tstate,*/ - py_code, /*PyCodeObject *code,*/ - py_globals, /*PyObject *globals,*/ - 0 /*PyObject *locals*/ - ); - if (!py_frame) goto bad; - py_frame->f_lineno = py_line; - PyTraceBack_Here(py_frame); -bad: - Py_XDECREF(py_code); - Py_XDECREF(py_frame); -} - -static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { - while (t->p) { - #if PY_MAJOR_VERSION < 3 - if (t->is_unicode) { - *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); - } else if (t->intern) { - *t->p = PyString_InternFromString(t->s); - } else { - *t->p = PyString_FromStringAndSize(t->s, t->n - 1); - } - #else /* Python 3+ has unicode identifiers */ - if (t->is_unicode | t->is_str) { - if (t->intern) { - *t->p = PyUnicode_InternFromString(t->s); - } else if (t->encoding) { - *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); - } else { - *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); - } - } else { - *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); - } - #endif - if (!*t->p) - return -1; - ++t; - } - return 0; -} - -static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(char* c_str) { - return __Pyx_PyUnicode_FromStringAndSize(c_str, strlen(c_str)); -} -static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { - Py_ssize_t ignore; - return __Pyx_PyObject_AsStringAndSize(o, &ignore); -} -static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { -#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT - if ( -#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII - __Pyx_sys_getdefaultencoding_not_ascii && -#endif - PyUnicode_Check(o)) { -#if PY_VERSION_HEX < 0x03030000 - char* defenc_c; - PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); - if (!defenc) return NULL; - defenc_c = PyBytes_AS_STRING(defenc); -#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII - { - char* end = defenc_c + PyBytes_GET_SIZE(defenc); - char* c; - for (c = defenc_c; c < end; c++) { - if ((unsigned char) (*c) >= 128) { - PyUnicode_AsASCIIString(o); - return NULL; - } - } - } -#endif /*__PYX_DEFAULT_STRING_ENCODING_IS_ASCII*/ - *length = PyBytes_GET_SIZE(defenc); - return defenc_c; -#else /* PY_VERSION_HEX < 0x03030000 */ - if (PyUnicode_READY(o) == -1) return NULL; -#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII - if (PyUnicode_IS_ASCII(o)) { - *length = PyUnicode_GET_DATA_SIZE(o); - return PyUnicode_AsUTF8(o); - } else { - PyUnicode_AsASCIIString(o); - return NULL; - } -#else /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII */ - return PyUnicode_AsUTF8AndSize(o, length); -#endif /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII */ -#endif /* PY_VERSION_HEX < 0x03030000 */ - } else -#endif /* __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT */ -#if !CYTHON_COMPILING_IN_PYPY -#if PY_VERSION_HEX >= 0x02060000 - if (PyByteArray_Check(o)) { - *length = PyByteArray_GET_SIZE(o); - return PyByteArray_AS_STRING(o); - } else -#endif -#endif - { - char* result; - int r = PyBytes_AsStringAndSize(o, &result, length); - if (unlikely(r < 0)) { - return NULL; - } else { - return result; - } - } -} -static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { - int is_true = x == Py_True; - if (is_true | (x == Py_False) | (x == Py_None)) return is_true; - else return PyObject_IsTrue(x); -} -static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) { - PyNumberMethods *m; - const char *name = NULL; - PyObject *res = NULL; -#if PY_MAJOR_VERSION < 3 - if (PyInt_Check(x) || PyLong_Check(x)) -#else - if (PyLong_Check(x)) -#endif - return Py_INCREF(x), x; - m = Py_TYPE(x)->tp_as_number; -#if PY_MAJOR_VERSION < 3 - if (m && m->nb_int) { - name = "int"; - res = PyNumber_Int(x); - } - else if (m && m->nb_long) { - name = "long"; - res = PyNumber_Long(x); - } -#else - if (m && m->nb_int) { - name = "int"; - res = PyNumber_Long(x); - } -#endif - if (res) { -#if PY_MAJOR_VERSION < 3 - if (!PyInt_Check(res) && !PyLong_Check(res)) { -#else - if (!PyLong_Check(res)) { -#endif - PyErr_Format(PyExc_TypeError, - "__%.4s__ returned non-%.4s (type %.200s)", - name, name, Py_TYPE(res)->tp_name); - Py_DECREF(res); - return NULL; - } - } - else if (!PyErr_Occurred()) { - PyErr_SetString(PyExc_TypeError, - "an integer is required"); - } - return res; -} -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - #include "longintrepr.h" - #endif -#endif -static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { - Py_ssize_t ival; - PyObject *x; -#if PY_MAJOR_VERSION < 3 - if (likely(PyInt_CheckExact(b))) - return PyInt_AS_LONG(b); -#endif - if (likely(PyLong_CheckExact(b))) { - #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - switch (Py_SIZE(b)) { - case -1: return -(sdigit)((PyLongObject*)b)->ob_digit[0]; - case 0: return 0; - case 1: return ((PyLongObject*)b)->ob_digit[0]; - } - #endif - #endif - #if PY_VERSION_HEX < 0x02060000 - return PyInt_AsSsize_t(b); - #else - return PyLong_AsSsize_t(b); - #endif - } - x = PyNumber_Index(b); - if (!x) return -1; - ival = PyInt_AsSsize_t(x); - Py_DECREF(x); - return ival; -} -static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { -#if PY_VERSION_HEX < 0x02050000 - if (ival <= LONG_MAX) - return PyInt_FromLong((long)ival); - else { - unsigned char *bytes = (unsigned char *) &ival; - int one = 1; int little = (int)*(unsigned char*)&one; - return _PyLong_FromByteArray(bytes, sizeof(size_t), little, 0); - } -#else - return PyInt_FromSize_t(ival); -#endif -} - - -#endif /* Py_PYTHON_H */ diff --git a/cortex/formats.pyx b/cortex/formats.pyx index a85a2231c..f1df7c08a 100644 --- a/cortex/formats.pyx +++ b/cortex/formats.pyx @@ -47,6 +47,30 @@ def read_gii(str filename): polys = gii.getArraysFromIntent('triangle')[0].data return pts, polys +@cython.boundscheck(False) +def read_stl(str filename): + cdef int i, j + + dtype = np.dtype("3f4, (3,3)f4, H") + with open(filename, 'r') as fp: + header = fp.read(80) + if header[:5] == "solid": + raise TypeError("Cannot read ASCII STL files") + npolys, = struct.unpack('I', fp.read(4)) + data = np.fromstring(fp.read(), dtype=dtype) + if npolys != len(data): + raise ValueError('File invalid') + + idx = dict() + polys = np.empty((npolys,3), dtype=np.uint32) + for i, pts in enumerate(data['f1']): + for j, pt in enumerate(pts): + if tuple(pt) not in idx: + idx[tuple(pt)] = len(idx) + polys[i, j] = idx[tuple(pt)] + + return np.array(idx.keys()), polys + @cython.boundscheck(False) def read_vtk(str filename): cdef str vtk, line @@ -126,6 +150,8 @@ def write_stl(bytes filename, object pts, object polys): fp.write(struct.pack('80xI', len(polys))) fp.write(data.tostring()) + + def write_gii(bytes filename, object pts, object polys): from nibabel import gifti pts_darray = gifti.GiftiDataArray.from_array(pts.astype(np.float32), "pointset") diff --git a/cortex/mapper/samplers.py b/cortex/mapper/samplers.py index db399a5e3..23ca1f927 100644 --- a/cortex/mapper/samplers.py +++ b/cortex/mapper/samplers.py @@ -9,7 +9,8 @@ def nearest(coords, shape, **kwargs): valid = ~(np.isnan(coords).all(1)) rcoords = coords[valid].round().astype(int) j = np.ravel_multi_index(rcoords.T[::-1], shape, mode='clip') - return np.nonzero(valid)[0], j, (rcoords > 0).all(1) #np.ones((valid.sum(),)) + #return np.nonzero(valid)[0], j, (rcoords > 0).all(1) #np.ones((valid.sum(),)) + return np.nonzero(valid)[0], j, np.ones((valid.sum(),)) def trilinear(coords, shape, **kwargs): #trilinear interpolation equation from http://paulbourke.net/miscellaneous/interpolation/ diff --git a/cortex/openctm.c b/cortex/openctm.c deleted file mode 100644 index e2f7128e3..000000000 --- a/cortex/openctm.c +++ /dev/null @@ -1,9615 +0,0 @@ -/* Generated by Cython 0.20.1 on Wed Oct 1 14:14:49 2014 */ - -#define PY_SSIZE_T_CLEAN -#ifndef CYTHON_USE_PYLONG_INTERNALS -#ifdef PYLONG_BITS_IN_DIGIT -#define CYTHON_USE_PYLONG_INTERNALS 0 -#else -#include "pyconfig.h" -#ifdef PYLONG_BITS_IN_DIGIT -#define CYTHON_USE_PYLONG_INTERNALS 1 -#else -#define CYTHON_USE_PYLONG_INTERNALS 0 -#endif -#endif -#endif -#include "Python.h" -#ifndef Py_PYTHON_H - #error Python headers needed to compile C extensions, please install development version of Python. -#elif PY_VERSION_HEX < 0x02040000 - #error Cython requires Python 2.4+. -#else -#define CYTHON_ABI "0_20_1" -#include /* For offsetof */ -#ifndef offsetof -#define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) -#endif -#if !defined(WIN32) && !defined(MS_WINDOWS) - #ifndef __stdcall - #define __stdcall - #endif - #ifndef __cdecl - #define __cdecl - #endif - #ifndef __fastcall - #define __fastcall - #endif -#endif -#ifndef DL_IMPORT - #define DL_IMPORT(t) t -#endif -#ifndef DL_EXPORT - #define DL_EXPORT(t) t -#endif -#ifndef PY_LONG_LONG - #define PY_LONG_LONG LONG_LONG -#endif -#ifndef Py_HUGE_VAL - #define Py_HUGE_VAL HUGE_VAL -#endif -#ifdef PYPY_VERSION -#define CYTHON_COMPILING_IN_PYPY 1 -#define CYTHON_COMPILING_IN_CPYTHON 0 -#else -#define CYTHON_COMPILING_IN_PYPY 0 -#define CYTHON_COMPILING_IN_CPYTHON 1 -#endif -#if CYTHON_COMPILING_IN_PYPY -#define Py_OptimizeFlag 0 -#endif -#if PY_VERSION_HEX < 0x02050000 - typedef int Py_ssize_t; - #define PY_SSIZE_T_MAX INT_MAX - #define PY_SSIZE_T_MIN INT_MIN - #define PY_FORMAT_SIZE_T "" - #define CYTHON_FORMAT_SSIZE_T "" - #define PyInt_FromSsize_t(z) PyInt_FromLong(z) - #define PyInt_AsSsize_t(o) __Pyx_PyInt_As_int(o) - #define PyNumber_Index(o) ((PyNumber_Check(o) && !PyFloat_Check(o)) ? PyNumber_Int(o) : \ - (PyErr_Format(PyExc_TypeError, \ - "expected index value, got %.200s", Py_TYPE(o)->tp_name), \ - (PyObject*)0)) - #define __Pyx_PyIndex_Check(o) (PyNumber_Check(o) && !PyFloat_Check(o) && \ - !PyComplex_Check(o)) - #define PyIndex_Check __Pyx_PyIndex_Check - #define PyErr_WarnEx(category, message, stacklevel) PyErr_Warn(category, message) - #define __PYX_BUILD_PY_SSIZE_T "i" -#else - #define __PYX_BUILD_PY_SSIZE_T "n" - #define CYTHON_FORMAT_SSIZE_T "z" - #define __Pyx_PyIndex_Check PyIndex_Check -#endif -#if PY_VERSION_HEX < 0x02060000 - #define Py_REFCNT(ob) (((PyObject*)(ob))->ob_refcnt) - #define Py_TYPE(ob) (((PyObject*)(ob))->ob_type) - #define Py_SIZE(ob) (((PyVarObject*)(ob))->ob_size) - #define PyVarObject_HEAD_INIT(type, size) \ - PyObject_HEAD_INIT(type) size, - #define PyType_Modified(t) - typedef struct { - void *buf; - PyObject *obj; - Py_ssize_t len; - Py_ssize_t itemsize; - int readonly; - int ndim; - char *format; - Py_ssize_t *shape; - Py_ssize_t *strides; - Py_ssize_t *suboffsets; - void *internal; - } Py_buffer; - #define PyBUF_SIMPLE 0 - #define PyBUF_WRITABLE 0x0001 - #define PyBUF_FORMAT 0x0004 - #define PyBUF_ND 0x0008 - #define PyBUF_STRIDES (0x0010 | PyBUF_ND) - #define PyBUF_C_CONTIGUOUS (0x0020 | PyBUF_STRIDES) - #define PyBUF_F_CONTIGUOUS (0x0040 | PyBUF_STRIDES) - #define PyBUF_ANY_CONTIGUOUS (0x0080 | PyBUF_STRIDES) - #define PyBUF_INDIRECT (0x0100 | PyBUF_STRIDES) - #define PyBUF_RECORDS (PyBUF_STRIDES | PyBUF_FORMAT | PyBUF_WRITABLE) - #define PyBUF_FULL (PyBUF_INDIRECT | PyBUF_FORMAT | PyBUF_WRITABLE) - typedef int (*getbufferproc)(PyObject *, Py_buffer *, int); - typedef void (*releasebufferproc)(PyObject *, Py_buffer *); -#endif -#if PY_MAJOR_VERSION < 3 - #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" - #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ - PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) - #define __Pyx_DefaultClassType PyClass_Type -#else - #define __Pyx_BUILTIN_MODULE_NAME "builtins" - #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ - PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) - #define __Pyx_DefaultClassType PyType_Type -#endif -#if PY_VERSION_HEX < 0x02060000 - #define PyUnicode_FromString(s) PyUnicode_Decode(s, strlen(s), "UTF-8", "strict") -#endif -#if PY_MAJOR_VERSION >= 3 - #define Py_TPFLAGS_CHECKTYPES 0 - #define Py_TPFLAGS_HAVE_INDEX 0 -#endif -#if (PY_VERSION_HEX < 0x02060000) || (PY_MAJOR_VERSION >= 3) - #define Py_TPFLAGS_HAVE_NEWBUFFER 0 -#endif -#if PY_VERSION_HEX < 0x02060000 - #define Py_TPFLAGS_HAVE_VERSION_TAG 0 -#endif -#if PY_VERSION_HEX < 0x02060000 && !defined(Py_TPFLAGS_IS_ABSTRACT) - #define Py_TPFLAGS_IS_ABSTRACT 0 -#endif -#if PY_VERSION_HEX < 0x030400a1 && !defined(Py_TPFLAGS_HAVE_FINALIZE) - #define Py_TPFLAGS_HAVE_FINALIZE 0 -#endif -#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) - #define CYTHON_PEP393_ENABLED 1 - #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ? \ - 0 : _PyUnicode_Ready((PyObject *)(op))) - #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) - #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) - #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u) - #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) - #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) -#else - #define CYTHON_PEP393_ENABLED 0 - #define __Pyx_PyUnicode_READY(op) (0) - #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) - #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) - #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE)) - #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) - #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) -#endif -#if CYTHON_COMPILING_IN_PYPY - #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) - #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) -#else - #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) - #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ? \ - PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) -#endif -#define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) -#define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) -#if PY_MAJOR_VERSION >= 3 - #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b) -#else - #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) -#endif -#if PY_MAJOR_VERSION >= 3 - #define PyBaseString_Type PyUnicode_Type - #define PyStringObject PyUnicodeObject - #define PyString_Type PyUnicode_Type - #define PyString_Check PyUnicode_Check - #define PyString_CheckExact PyUnicode_CheckExact -#endif -#if PY_VERSION_HEX < 0x02060000 - #define PyBytesObject PyStringObject - #define PyBytes_Type PyString_Type - #define PyBytes_Check PyString_Check - #define PyBytes_CheckExact PyString_CheckExact - #define PyBytes_FromString PyString_FromString - #define PyBytes_FromStringAndSize PyString_FromStringAndSize - #define PyBytes_FromFormat PyString_FromFormat - #define PyBytes_DecodeEscape PyString_DecodeEscape - #define PyBytes_AsString PyString_AsString - #define PyBytes_AsStringAndSize PyString_AsStringAndSize - #define PyBytes_Size PyString_Size - #define PyBytes_AS_STRING PyString_AS_STRING - #define PyBytes_GET_SIZE PyString_GET_SIZE - #define PyBytes_Repr PyString_Repr - #define PyBytes_Concat PyString_Concat - #define PyBytes_ConcatAndDel PyString_ConcatAndDel -#endif -#if PY_MAJOR_VERSION >= 3 - #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) - #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj) -#else - #define __Pyx_PyBaseString_Check(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj) || \ - PyString_Check(obj) || PyUnicode_Check(obj)) - #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj)) -#endif -#if PY_VERSION_HEX < 0x02060000 - #define PySet_Check(obj) PyObject_TypeCheck(obj, &PySet_Type) - #define PyFrozenSet_Check(obj) PyObject_TypeCheck(obj, &PyFrozenSet_Type) -#endif -#ifndef PySet_CheckExact - #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type) -#endif -#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) -#if PY_MAJOR_VERSION >= 3 - #define PyIntObject PyLongObject - #define PyInt_Type PyLong_Type - #define PyInt_Check(op) PyLong_Check(op) - #define PyInt_CheckExact(op) PyLong_CheckExact(op) - #define PyInt_FromString PyLong_FromString - #define PyInt_FromUnicode PyLong_FromUnicode - #define PyInt_FromLong PyLong_FromLong - #define PyInt_FromSize_t PyLong_FromSize_t - #define PyInt_FromSsize_t PyLong_FromSsize_t - #define PyInt_AsLong PyLong_AsLong - #define PyInt_AS_LONG PyLong_AS_LONG - #define PyInt_AsSsize_t PyLong_AsSsize_t - #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask - #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask - #define PyNumber_Int PyNumber_Long -#endif -#if PY_MAJOR_VERSION >= 3 - #define PyBoolObject PyLongObject -#endif -#if PY_VERSION_HEX < 0x030200A4 - typedef long Py_hash_t; - #define __Pyx_PyInt_FromHash_t PyInt_FromLong - #define __Pyx_PyInt_AsHash_t PyInt_AsLong -#else - #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t - #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t -#endif -#if (PY_MAJOR_VERSION < 3) || (PY_VERSION_HEX >= 0x03010300) - #define __Pyx_PySequence_GetSlice(obj, a, b) PySequence_GetSlice(obj, a, b) - #define __Pyx_PySequence_SetSlice(obj, a, b, value) PySequence_SetSlice(obj, a, b, value) - #define __Pyx_PySequence_DelSlice(obj, a, b) PySequence_DelSlice(obj, a, b) -#else - #define __Pyx_PySequence_GetSlice(obj, a, b) (unlikely(!(obj)) ? \ - (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), (PyObject*)0) : \ - (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_GetSlice(obj, a, b)) : \ - (PyErr_Format(PyExc_TypeError, "'%.200s' object is unsliceable", (obj)->ob_type->tp_name), (PyObject*)0))) - #define __Pyx_PySequence_SetSlice(obj, a, b, value) (unlikely(!(obj)) ? \ - (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), -1) : \ - (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_SetSlice(obj, a, b, value)) : \ - (PyErr_Format(PyExc_TypeError, "'%.200s' object doesn't support slice assignment", (obj)->ob_type->tp_name), -1))) - #define __Pyx_PySequence_DelSlice(obj, a, b) (unlikely(!(obj)) ? \ - (PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), -1) : \ - (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_DelSlice(obj, a, b)) : \ - (PyErr_Format(PyExc_TypeError, "'%.200s' object doesn't support slice deletion", (obj)->ob_type->tp_name), -1))) -#endif -#if PY_MAJOR_VERSION >= 3 - #define PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func)) -#endif -#if PY_VERSION_HEX < 0x02050000 - #define __Pyx_GetAttrString(o,n) PyObject_GetAttrString((o),((char *)(n))) - #define __Pyx_SetAttrString(o,n,a) PyObject_SetAttrString((o),((char *)(n)),(a)) - #define __Pyx_DelAttrString(o,n) PyObject_DelAttrString((o),((char *)(n))) -#else - #define __Pyx_GetAttrString(o,n) PyObject_GetAttrString((o),(n)) - #define __Pyx_SetAttrString(o,n,a) PyObject_SetAttrString((o),(n),(a)) - #define __Pyx_DelAttrString(o,n) PyObject_DelAttrString((o),(n)) -#endif -#if PY_VERSION_HEX < 0x02050000 - #define __Pyx_NAMESTR(n) ((char *)(n)) - #define __Pyx_DOCSTR(n) ((char *)(n)) -#else - #define __Pyx_NAMESTR(n) (n) - #define __Pyx_DOCSTR(n) (n) -#endif -#ifndef CYTHON_INLINE - #if defined(__GNUC__) - #define CYTHON_INLINE __inline__ - #elif defined(_MSC_VER) - #define CYTHON_INLINE __inline - #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L - #define CYTHON_INLINE inline - #else - #define CYTHON_INLINE - #endif -#endif -#ifndef CYTHON_RESTRICT - #if defined(__GNUC__) - #define CYTHON_RESTRICT __restrict__ - #elif defined(_MSC_VER) && _MSC_VER >= 1400 - #define CYTHON_RESTRICT __restrict - #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L - #define CYTHON_RESTRICT restrict - #else - #define CYTHON_RESTRICT - #endif -#endif -#ifdef NAN -#define __PYX_NAN() ((float) NAN) -#else -static CYTHON_INLINE float __PYX_NAN() { - /* Initialize NaN. The sign is irrelevant, an exponent with all bits 1 and - a nonzero mantissa means NaN. If the first bit in the mantissa is 1, it is - a quiet NaN. */ - float value; - memset(&value, 0xFF, sizeof(value)); - return value; -} -#endif - - -#if PY_MAJOR_VERSION >= 3 - #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) - #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) -#else - #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) - #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) -#endif - -#ifndef __PYX_EXTERN_C - #ifdef __cplusplus - #define __PYX_EXTERN_C extern "C" - #else - #define __PYX_EXTERN_C extern - #endif -#endif - -#if defined(WIN32) || defined(MS_WINDOWS) -#define _USE_MATH_DEFINES -#endif -#include -#define __PYX_HAVE__cortex__openctm -#define __PYX_HAVE_API__cortex__openctm -#include "openctm.h" -#include "string.h" -#include "stdio.h" -#include "stdlib.h" -#include "numpy/arrayobject.h" -#include "numpy/ufuncobject.h" -#ifdef _OPENMP -#include -#endif /* _OPENMP */ - -#ifdef PYREX_WITHOUT_ASSERTIONS -#define CYTHON_WITHOUT_ASSERTIONS -#endif - -#ifndef CYTHON_UNUSED -# if defined(__GNUC__) -# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) -# define CYTHON_UNUSED __attribute__ ((__unused__)) -# else -# define CYTHON_UNUSED -# endif -# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) -# define CYTHON_UNUSED __attribute__ ((__unused__)) -# else -# define CYTHON_UNUSED -# endif -#endif -typedef struct {PyObject **p; char *s; const Py_ssize_t n; const char* encoding; - const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; /*proto*/ - -#define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 -#define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0 -#define __PYX_DEFAULT_STRING_ENCODING "" -#define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString -#define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize -#define __Pyx_fits_Py_ssize_t(v, type, is_signed) ( \ - (sizeof(type) < sizeof(Py_ssize_t)) || \ - (sizeof(type) > sizeof(Py_ssize_t) && \ - likely(v < (type)PY_SSIZE_T_MAX || \ - v == (type)PY_SSIZE_T_MAX) && \ - (!is_signed || likely(v > (type)PY_SSIZE_T_MIN || \ - v == (type)PY_SSIZE_T_MIN))) || \ - (sizeof(type) == sizeof(Py_ssize_t) && \ - (is_signed || likely(v < (type)PY_SSIZE_T_MAX || \ - v == (type)PY_SSIZE_T_MAX))) ) -static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); -static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); -#define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) -#define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) -#define __Pyx_PyBytes_FromString PyBytes_FromString -#define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize -static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(char*); -#if PY_MAJOR_VERSION < 3 - #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString - #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize -#else - #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString - #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize -#endif -#define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_FromUString(s) __Pyx_PyObject_FromString((char*)s) -#define __Pyx_PyBytes_FromUString(s) __Pyx_PyBytes_FromString((char*)s) -#define __Pyx_PyByteArray_FromUString(s) __Pyx_PyByteArray_FromString((char*)s) -#define __Pyx_PyStr_FromUString(s) __Pyx_PyStr_FromString((char*)s) -#define __Pyx_PyUnicode_FromUString(s) __Pyx_PyUnicode_FromString((char*)s) -#if PY_MAJOR_VERSION < 3 -static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) -{ - const Py_UNICODE *u_end = u; - while (*u_end++) ; - return u_end - u - 1; -} -#else -#define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen -#endif -#define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u)) -#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode -#define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode -#define __Pyx_Owned_Py_None(b) (Py_INCREF(Py_None), Py_None) -#define __Pyx_PyBool_FromLong(b) ((b) ? (Py_INCREF(Py_True), Py_True) : (Py_INCREF(Py_False), Py_False)) -static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); -static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x); -static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); -static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); -#if CYTHON_COMPILING_IN_CPYTHON -#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) -#else -#define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) -#endif -#define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) -#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII -static int __Pyx_sys_getdefaultencoding_not_ascii; -static int __Pyx_init_sys_getdefaultencoding_params(void) { - PyObject* sys = NULL; - PyObject* default_encoding = NULL; - PyObject* ascii_chars_u = NULL; - PyObject* ascii_chars_b = NULL; - sys = PyImport_ImportModule("sys"); - if (sys == NULL) goto bad; - default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); - if (default_encoding == NULL) goto bad; - if (strcmp(PyBytes_AsString(default_encoding), "ascii") == 0) { - __Pyx_sys_getdefaultencoding_not_ascii = 0; - } else { - const char* default_encoding_c = PyBytes_AS_STRING(default_encoding); - char ascii_chars[128]; - int c; - for (c = 0; c < 128; c++) { - ascii_chars[c] = c; - } - __Pyx_sys_getdefaultencoding_not_ascii = 1; - ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); - if (ascii_chars_u == NULL) goto bad; - ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); - if (ascii_chars_b == NULL || strncmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { - PyErr_Format( - PyExc_ValueError, - "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", - default_encoding_c); - goto bad; - } - } - Py_XDECREF(sys); - Py_XDECREF(default_encoding); - Py_XDECREF(ascii_chars_u); - Py_XDECREF(ascii_chars_b); - return 0; -bad: - Py_XDECREF(sys); - Py_XDECREF(default_encoding); - Py_XDECREF(ascii_chars_u); - Py_XDECREF(ascii_chars_b); - return -1; -} -#endif -#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 -#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) -#else -#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) -#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT -static char* __PYX_DEFAULT_STRING_ENCODING; -static int __Pyx_init_sys_getdefaultencoding_params(void) { - PyObject* sys = NULL; - PyObject* default_encoding = NULL; - char* default_encoding_c; - sys = PyImport_ImportModule("sys"); - if (sys == NULL) goto bad; - default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); - if (default_encoding == NULL) goto bad; - default_encoding_c = PyBytes_AS_STRING(default_encoding); - __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c)); - strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); - Py_DECREF(sys); - Py_DECREF(default_encoding); - return 0; -bad: - Py_XDECREF(sys); - Py_XDECREF(default_encoding); - return -1; -} -#endif -#endif - - -#ifdef __GNUC__ - /* Test for GCC > 2.95 */ - #if __GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)) - #define likely(x) __builtin_expect(!!(x), 1) - #define unlikely(x) __builtin_expect(!!(x), 0) - #else /* __GNUC__ > 2 ... */ - #define likely(x) (x) - #define unlikely(x) (x) - #endif /* __GNUC__ > 2 ... */ -#else /* __GNUC__ */ - #define likely(x) (x) - #define unlikely(x) (x) -#endif /* __GNUC__ */ - -static PyObject *__pyx_m; 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/*proto*/ - -/* Module declarations from 'cortex.openctm' */ -static PyTypeObject *__pyx_ptype_6cortex_7openctm_CTMfile = 0; -static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_5numpy_float32_t = { "float32_t", NULL, sizeof(__pyx_t_5numpy_float32_t), { 0 }, 0, 'R', 0, 0 }; -static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_5numpy_uint32_t = { "uint32_t", NULL, sizeof(__pyx_t_5numpy_uint32_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_5numpy_uint32_t) ? 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/* proto */ -static PyObject *__pyx_pf_6cortex_7openctm_7CTMfile_6setMesh(struct __pyx_obj_6cortex_7openctm_CTMfile *__pyx_v_self, PyObject *__pyx_v_pts, PyObject *__pyx_v_polys, PyObject *__pyx_v_norms); /* proto */ -static PyObject *__pyx_pf_6cortex_7openctm_7CTMfile_8addAttrib(struct __pyx_obj_6cortex_7openctm_CTMfile *__pyx_v_self, PyObject *__pyx_v_attrib, PyObject *__pyx_v_name); /* proto */ -static PyObject *__pyx_pf_6cortex_7openctm_7CTMfile_10addUV(struct __pyx_obj_6cortex_7openctm_CTMfile *__pyx_v_self, PyObject *__pyx_v_uv, PyObject *__pyx_v_name, PyObject *__pyx_v_filename); /* proto */ -static PyObject *__pyx_pf_6cortex_7openctm_7CTMfile_12getMesh(struct __pyx_obj_6cortex_7openctm_CTMfile *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_6cortex_7openctm_7CTMfile_14save(struct __pyx_obj_6cortex_7openctm_CTMfile *__pyx_v_self, PyObject *__pyx_v_method, int __pyx_v_level); /* proto */ -static PyObject *__pyx_pf_6cortex_7openctm_7CTMfile_8filename___get__(struct __pyx_obj_6cortex_7openctm_CTMfile *__pyx_v_self); /* proto */ -static int __pyx_pf_6cortex_7openctm_7CTMfile_8filename_2__set__(struct __pyx_obj_6cortex_7openctm_CTMfile *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ -static int __pyx_pf_6cortex_7openctm_7CTMfile_8filename_4__del__(struct __pyx_obj_6cortex_7openctm_CTMfile *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_6cortex_7openctm_7CTMfile_4mode___get__(struct __pyx_obj_6cortex_7openctm_CTMfile *__pyx_v_self); /* proto */ -static int __pyx_pf_6cortex_7openctm_7CTMfile_4mode_2__set__(struct __pyx_obj_6cortex_7openctm_CTMfile *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ -static int __pyx_pf_6cortex_7openctm_7CTMfile_4mode_4__del__(struct __pyx_obj_6cortex_7openctm_CTMfile *__pyx_v_self); /* proto */ -static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ -static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ -static PyObject *__pyx_tp_new_6cortex_7openctm_CTMfile(PyTypeObject *t, PyObject *a, PyObject *k); 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(result == 0) : (result != 0); - } - } else if ((s1 == Py_None) & s2_is_unicode) { - goto return_ne; - } else if ((s2 == Py_None) & s1_is_unicode) { - goto return_ne; - } else { - int result; - PyObject* py_result = PyObject_RichCompare(s1, s2, equals); - if (!py_result) - return -1; - result = __Pyx_PyObject_IsTrue(py_result); - Py_DECREF(py_result); - return result; - } -return_eq: - #if PY_MAJOR_VERSION < 3 - Py_XDECREF(owned_ref); - #endif - return (equals == Py_EQ); -return_ne: - #if PY_MAJOR_VERSION < 3 - Py_XDECREF(owned_ref); - #endif - return (equals == Py_NE); -#endif -} - -#if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { - PyObject *result; - ternaryfunc call = func->ob_type->tp_call; - if (unlikely(!call)) - return PyObject_Call(func, arg, kw); -#if PY_VERSION_HEX >= 0x02060000 - if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) - return NULL; -#endif - result = (*call)(func, arg, kw); -#if PY_VERSION_HEX >= 0x02060000 - Py_LeaveRecursiveCall(); -#endif - if (unlikely(!result) && unlikely(!PyErr_Occurred())) { - PyErr_SetString( - PyExc_SystemError, - "NULL result without error in PyObject_Call"); - } - return result; -} -#endif - -static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) { -#if CYTHON_COMPILING_IN_CPYTHON - PyObject *tmp_type, *tmp_value, *tmp_tb; - PyThreadState *tstate = PyThreadState_GET(); - tmp_type = tstate->curexc_type; - tmp_value = tstate->curexc_value; - tmp_tb = tstate->curexc_traceback; - tstate->curexc_type = type; - tstate->curexc_value = value; - tstate->curexc_traceback = tb; - Py_XDECREF(tmp_type); - Py_XDECREF(tmp_value); - Py_XDECREF(tmp_tb); -#else - PyErr_Restore(type, value, tb); -#endif -} -static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) { -#if CYTHON_COMPILING_IN_CPYTHON - PyThreadState *tstate = PyThreadState_GET(); - *type = tstate->curexc_type; - *value = tstate->curexc_value; - *tb = tstate->curexc_traceback; - tstate->curexc_type = 0; - tstate->curexc_value = 0; - tstate->curexc_traceback = 0; -#else - PyErr_Fetch(type, value, tb); -#endif -} - -#if PY_MAJOR_VERSION < 3 -static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, - CYTHON_UNUSED PyObject *cause) { - Py_XINCREF(type); - if (!value || value == Py_None) - value = NULL; - else - Py_INCREF(value); - if (!tb || tb == Py_None) - tb = NULL; - else { - Py_INCREF(tb); - if (!PyTraceBack_Check(tb)) { - PyErr_SetString(PyExc_TypeError, - "raise: arg 3 must be a traceback or None"); - goto raise_error; - } - } - #if PY_VERSION_HEX < 0x02050000 - if (PyClass_Check(type)) { - #else - if (PyType_Check(type)) { - #endif -#if CYTHON_COMPILING_IN_PYPY - if (!value) { - Py_INCREF(Py_None); - value = Py_None; - } -#endif - PyErr_NormalizeException(&type, &value, &tb); - } else { - if (value) { - PyErr_SetString(PyExc_TypeError, - "instance exception may not have a separate value"); - goto raise_error; - } - value = type; - #if PY_VERSION_HEX < 0x02050000 - if (PyInstance_Check(type)) { - type = (PyObject*) ((PyInstanceObject*)type)->in_class; - Py_INCREF(type); - } else { - type = 0; - PyErr_SetString(PyExc_TypeError, - "raise: exception must be an old-style class or instance"); - goto raise_error; - } - #else - type = (PyObject*) Py_TYPE(type); - Py_INCREF(type); - if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { - PyErr_SetString(PyExc_TypeError, - "raise: exception class must be a subclass of BaseException"); - goto raise_error; - } - #endif - } - __Pyx_ErrRestore(type, value, tb); - return; -raise_error: - Py_XDECREF(value); - Py_XDECREF(type); - Py_XDECREF(tb); - return; -} -#else /* Python 3+ */ -static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { - PyObject* owned_instance = NULL; - if (tb == Py_None) { - tb = 0; - } else if (tb && !PyTraceBack_Check(tb)) { - PyErr_SetString(PyExc_TypeError, - "raise: arg 3 must be a traceback or None"); - goto bad; - } - if (value == Py_None) - value = 0; - if (PyExceptionInstance_Check(type)) { - if (value) { - PyErr_SetString(PyExc_TypeError, - "instance exception may not have a separate value"); - goto bad; - } - value = type; - type = (PyObject*) Py_TYPE(value); - } else if (PyExceptionClass_Check(type)) { - PyObject *instance_class = NULL; - if (value && PyExceptionInstance_Check(value)) { - instance_class = (PyObject*) Py_TYPE(value); - if (instance_class != type) { - if (PyObject_IsSubclass(instance_class, type)) { - type = instance_class; - } else { - instance_class = NULL; - } - } - } - if (!instance_class) { - PyObject *args; - if (!value) - args = PyTuple_New(0); - else if (PyTuple_Check(value)) { - Py_INCREF(value); - args = value; - } else - args = PyTuple_Pack(1, value); - if (!args) - goto bad; - owned_instance = PyObject_Call(type, args, NULL); - Py_DECREF(args); - if (!owned_instance) - goto bad; - value = owned_instance; - if (!PyExceptionInstance_Check(value)) { - PyErr_Format(PyExc_TypeError, - "calling %R should have returned an instance of " - "BaseException, not %R", - type, Py_TYPE(value)); - goto bad; - } - } - } else { - PyErr_SetString(PyExc_TypeError, - "raise: exception class must be a subclass of BaseException"); - goto bad; - } -#if PY_VERSION_HEX >= 0x03030000 - if (cause) { -#else - if (cause && cause != Py_None) { -#endif - PyObject *fixed_cause; - if (cause == Py_None) { - fixed_cause = NULL; - } else if (PyExceptionClass_Check(cause)) { - fixed_cause = PyObject_CallObject(cause, NULL); - if (fixed_cause == NULL) - goto bad; - } else if (PyExceptionInstance_Check(cause)) { - fixed_cause = cause; - Py_INCREF(fixed_cause); - } else { - PyErr_SetString(PyExc_TypeError, - "exception causes must derive from " - "BaseException"); - goto bad; - } - PyException_SetCause(value, fixed_cause); - } - PyErr_SetObject(type, value); - if (tb) { - PyThreadState *tstate = PyThreadState_GET(); - PyObject* tmp_tb = tstate->curexc_traceback; - if (tb != tmp_tb) { - Py_INCREF(tb); - tstate->curexc_traceback = tb; - Py_XDECREF(tmp_tb); - } - } -bad: - Py_XDECREF(owned_instance); - return; -} -#endif - -static CYTHON_INLINE int __Pyx_IsLittleEndian(void) { - unsigned int n = 1; - return *(unsigned char*)(&n) != 0; -} -static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, - __Pyx_BufFmt_StackElem* stack, - __Pyx_TypeInfo* type) { - stack[0].field = &ctx->root; - stack[0].parent_offset = 0; - ctx->root.type = type; - ctx->root.name = "buffer dtype"; - ctx->root.offset = 0; - ctx->head = stack; - ctx->head->field = &ctx->root; - ctx->fmt_offset = 0; - ctx->head->parent_offset = 0; - ctx->new_packmode = '@'; - ctx->enc_packmode = '@'; - ctx->new_count = 1; - ctx->enc_count = 0; - ctx->enc_type = 0; - ctx->is_complex = 0; - ctx->is_valid_array = 0; - ctx->struct_alignment = 0; - while (type->typegroup == 'S') { - ++ctx->head; - ctx->head->field = type->fields; - ctx->head->parent_offset = 0; - type = type->fields->type; - } -} -static int __Pyx_BufFmt_ParseNumber(const char** ts) { - int count; - const char* t = *ts; - if (*t < '0' || *t > '9') { - return -1; - } else { - count = *t++ - '0'; - while (*t >= '0' && *t < '9') { - count *= 10; - count += *t++ - '0'; - } - } - *ts = t; - return count; -} -static int __Pyx_BufFmt_ExpectNumber(const char **ts) { - int number = __Pyx_BufFmt_ParseNumber(ts); - if (number == -1) /* First char was not a digit */ - PyErr_Format(PyExc_ValueError,\ - "Does not understand character buffer dtype format string ('%c')", **ts); - return number; -} -static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) { - PyErr_Format(PyExc_ValueError, - "Unexpected format string character: '%c'", ch); -} -static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) { - switch (ch) { - case 'c': return "'char'"; - case 'b': return "'signed char'"; - case 'B': return "'unsigned char'"; - case 'h': return "'short'"; - case 'H': return "'unsigned short'"; - case 'i': return "'int'"; - case 'I': return "'unsigned int'"; - case 'l': return "'long'"; - case 'L': return "'unsigned long'"; - case 'q': return "'long long'"; - case 'Q': return "'unsigned long long'"; - case 'f': return (is_complex ? "'complex float'" : "'float'"); - case 'd': return (is_complex ? "'complex double'" : "'double'"); - case 'g': return (is_complex ? "'complex long double'" : "'long double'"); - case 'T': return "a struct"; - case 'O': return "Python object"; - case 'P': return "a pointer"; - case 's': case 'p': return "a string"; - case 0: return "end"; - default: return "unparseable format string"; - } -} -static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) { - switch (ch) { - case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; - case 'h': case 'H': return 2; - case 'i': case 'I': case 'l': case 'L': return 4; - case 'q': case 'Q': return 8; - case 'f': return (is_complex ? 8 : 4); - case 'd': return (is_complex ? 16 : 8); - case 'g': { - PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g').."); - return 0; - } - case 'O': case 'P': return sizeof(void*); - default: - __Pyx_BufFmt_RaiseUnexpectedChar(ch); - return 0; - } -} -static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) { - switch (ch) { - case 'c': case 'b': case 'B': case 's': case 'p': return 1; - case 'h': case 'H': return sizeof(short); - case 'i': case 'I': return sizeof(int); - case 'l': case 'L': return sizeof(long); - #ifdef HAVE_LONG_LONG - case 'q': case 'Q': return sizeof(PY_LONG_LONG); - #endif - case 'f': return sizeof(float) * (is_complex ? 2 : 1); - case 'd': return sizeof(double) * (is_complex ? 2 : 1); - case 'g': return sizeof(long double) * (is_complex ? 2 : 1); - case 'O': case 'P': return sizeof(void*); - default: { - __Pyx_BufFmt_RaiseUnexpectedChar(ch); - return 0; - } - } -} -typedef struct { char c; short x; } __Pyx_st_short; -typedef struct { char c; int x; } __Pyx_st_int; -typedef struct { char c; long x; } __Pyx_st_long; -typedef struct { char c; float x; } __Pyx_st_float; -typedef struct { char c; double x; } __Pyx_st_double; -typedef struct { char c; long double x; } __Pyx_st_longdouble; -typedef struct { char c; void *x; } __Pyx_st_void_p; -#ifdef HAVE_LONG_LONG -typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong; -#endif -static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) { - switch (ch) { - case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; - case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short); - case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int); - case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long); -#ifdef HAVE_LONG_LONG - case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG); -#endif - case 'f': return sizeof(__Pyx_st_float) - sizeof(float); - case 'd': return sizeof(__Pyx_st_double) - sizeof(double); - case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double); - case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*); - default: - __Pyx_BufFmt_RaiseUnexpectedChar(ch); - return 0; - } -} -/* These are for computing the padding at the end of the struct to align - on the first member of the struct. This will probably the same as above, - but we don't have any guarantees. - */ -typedef struct { short x; char c; } __Pyx_pad_short; -typedef struct { int x; char c; } __Pyx_pad_int; -typedef struct { long x; char c; } __Pyx_pad_long; -typedef struct { float x; char c; } __Pyx_pad_float; -typedef struct { double x; char c; } __Pyx_pad_double; -typedef struct { long double x; char c; } __Pyx_pad_longdouble; -typedef struct { void *x; char c; } __Pyx_pad_void_p; -#ifdef HAVE_LONG_LONG -typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong; -#endif -static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) { - switch (ch) { - case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; - case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short); - case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int); - case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long); -#ifdef HAVE_LONG_LONG - case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG); -#endif - case 'f': return sizeof(__Pyx_pad_float) - sizeof(float); - case 'd': return sizeof(__Pyx_pad_double) - sizeof(double); - case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double); - case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*); - default: - __Pyx_BufFmt_RaiseUnexpectedChar(ch); - return 0; - } -} -static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) { - switch (ch) { - case 'c': - return 'H'; - case 'b': case 'h': case 'i': - case 'l': case 'q': case 's': case 'p': - return 'I'; - case 'B': case 'H': case 'I': case 'L': case 'Q': - return 'U'; - case 'f': case 'd': case 'g': - return (is_complex ? 'C' : 'R'); - case 'O': - return 'O'; - case 'P': - return 'P'; - default: { - __Pyx_BufFmt_RaiseUnexpectedChar(ch); - return 0; - } - } -} -static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) { - if (ctx->head == NULL || ctx->head->field == &ctx->root) { - const char* expected; - const char* quote; - if (ctx->head == NULL) { - expected = "end"; - quote = ""; - } else { - expected = ctx->head->field->type->name; - quote = "'"; - } - PyErr_Format(PyExc_ValueError, - "Buffer dtype mismatch, expected %s%s%s but got %s", - quote, expected, quote, - __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex)); - } else { - __Pyx_StructField* field = ctx->head->field; - __Pyx_StructField* parent = (ctx->head - 1)->field; - PyErr_Format(PyExc_ValueError, - "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'", - field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex), - parent->type->name, field->name); - } -} -static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) { - char group; - size_t size, offset, arraysize = 1; - if (ctx->enc_type == 0) return 0; - if (ctx->head->field->type->arraysize[0]) { - int i, ndim = 0; - if (ctx->enc_type == 's' || ctx->enc_type == 'p') { - ctx->is_valid_array = ctx->head->field->type->ndim == 1; - ndim = 1; - if (ctx->enc_count != ctx->head->field->type->arraysize[0]) { - PyErr_Format(PyExc_ValueError, - "Expected a dimension of size %zu, got %zu", - ctx->head->field->type->arraysize[0], ctx->enc_count); - return -1; - } - } - if (!ctx->is_valid_array) { - PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d", - ctx->head->field->type->ndim, ndim); - return -1; - } - for (i = 0; i < ctx->head->field->type->ndim; i++) { - arraysize *= ctx->head->field->type->arraysize[i]; - } - ctx->is_valid_array = 0; - ctx->enc_count = 1; - } - group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex); - do { - __Pyx_StructField* field = ctx->head->field; - __Pyx_TypeInfo* type = field->type; - if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') { - size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex); - } else { - size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex); - } - if (ctx->enc_packmode == '@') { - size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex); - size_t align_mod_offset; - if (align_at == 0) return -1; - align_mod_offset = ctx->fmt_offset % align_at; - if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset; - if (ctx->struct_alignment == 0) - ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type, - ctx->is_complex); - } - if (type->size != size || type->typegroup != group) { - if (type->typegroup == 'C' && type->fields != NULL) { - size_t parent_offset = ctx->head->parent_offset + field->offset; - ++ctx->head; - ctx->head->field = type->fields; - ctx->head->parent_offset = parent_offset; - continue; - } - if ((type->typegroup == 'H' || group == 'H') && type->size == size) { - } else { - __Pyx_BufFmt_RaiseExpected(ctx); - return -1; - } - } - offset = ctx->head->parent_offset + field->offset; - if (ctx->fmt_offset != offset) { - PyErr_Format(PyExc_ValueError, - "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected", - (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset); - return -1; - } - ctx->fmt_offset += size; - if (arraysize) - ctx->fmt_offset += (arraysize - 1) * size; - --ctx->enc_count; /* Consume from buffer string */ - while (1) { - if (field == &ctx->root) { - ctx->head = NULL; - if (ctx->enc_count != 0) { - __Pyx_BufFmt_RaiseExpected(ctx); - return -1; - } - break; /* breaks both loops as ctx->enc_count == 0 */ - } - ctx->head->field = ++field; - if (field->type == NULL) { - --ctx->head; - field = ctx->head->field; - continue; - } else if (field->type->typegroup == 'S') { - size_t parent_offset = ctx->head->parent_offset + field->offset; - if (field->type->fields->type == NULL) continue; /* empty struct */ - field = field->type->fields; - ++ctx->head; - ctx->head->field = field; - ctx->head->parent_offset = parent_offset; - break; - } else { - break; - } - } - } while (ctx->enc_count); - ctx->enc_type = 0; - ctx->is_complex = 0; - return 0; -} -static CYTHON_INLINE PyObject * -__pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp) -{ - const char *ts = *tsp; - int i = 0, number; - int ndim = ctx->head->field->type->ndim; -; - ++ts; - if (ctx->new_count != 1) { - PyErr_SetString(PyExc_ValueError, - "Cannot handle repeated arrays in format string"); - return NULL; - } - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - while (*ts && *ts != ')') { - switch (*ts) { - case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue; - default: break; /* not a 'break' in the loop */ - } - number = __Pyx_BufFmt_ExpectNumber(&ts); - if (number == -1) return NULL; - if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i]) - return PyErr_Format(PyExc_ValueError, - "Expected a dimension of size %zu, got %d", - ctx->head->field->type->arraysize[i], number); - if (*ts != ',' && *ts != ')') - return PyErr_Format(PyExc_ValueError, - "Expected a comma in format string, got '%c'", *ts); - if (*ts == ',') ts++; - i++; - } - if (i != ndim) - return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d", - ctx->head->field->type->ndim, i); - if (!*ts) { - PyErr_SetString(PyExc_ValueError, - "Unexpected end of format string, expected ')'"); - return NULL; - } - ctx->is_valid_array = 1; - ctx->new_count = 1; - *tsp = ++ts; - return Py_None; -} -static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) { - int got_Z = 0; - while (1) { - switch(*ts) { - case 0: - if (ctx->enc_type != 0 && ctx->head == NULL) { - __Pyx_BufFmt_RaiseExpected(ctx); - return NULL; - } - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - if (ctx->head != NULL) { - __Pyx_BufFmt_RaiseExpected(ctx); - return NULL; - } - return ts; - case ' ': - case 10: - case 13: - ++ts; - break; - case '<': - if (!__Pyx_IsLittleEndian()) { - PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler"); - return NULL; - } - ctx->new_packmode = '='; - ++ts; - break; - case '>': - case '!': - if (__Pyx_IsLittleEndian()) { - PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler"); - return NULL; - } - ctx->new_packmode = '='; - ++ts; - break; - case '=': - case '@': - case '^': - ctx->new_packmode = *ts++; - break; - case 'T': /* substruct */ - { - const char* ts_after_sub; - size_t i, struct_count = ctx->new_count; - size_t struct_alignment = ctx->struct_alignment; - ctx->new_count = 1; - ++ts; - if (*ts != '{') { - PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'"); - return NULL; - } - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - ctx->enc_type = 0; /* Erase processed last struct element */ - ctx->enc_count = 0; - ctx->struct_alignment = 0; - ++ts; - ts_after_sub = ts; - for (i = 0; i != struct_count; ++i) { - ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts); - if (!ts_after_sub) return NULL; - } - ts = ts_after_sub; - if (struct_alignment) ctx->struct_alignment = struct_alignment; - } - break; - case '}': /* end of substruct; either repeat or move on */ - { - size_t alignment = ctx->struct_alignment; - ++ts; - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - ctx->enc_type = 0; /* Erase processed last struct element */ - if (alignment && ctx->fmt_offset % alignment) { - ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment); - } - } - return ts; - case 'x': - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - ctx->fmt_offset += ctx->new_count; - ctx->new_count = 1; - ctx->enc_count = 0; - ctx->enc_type = 0; - ctx->enc_packmode = ctx->new_packmode; - ++ts; - break; - case 'Z': - got_Z = 1; - ++ts; - if (*ts != 'f' && *ts != 'd' && *ts != 'g') { - __Pyx_BufFmt_RaiseUnexpectedChar('Z'); - return NULL; - } /* fall through */ - case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I': - case 'l': case 'L': case 'q': case 'Q': - case 'f': case 'd': case 'g': - case 'O': case 's': case 'p': - if (ctx->enc_type == *ts && got_Z == ctx->is_complex && - ctx->enc_packmode == ctx->new_packmode) { - ctx->enc_count += ctx->new_count; - } else { - if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; - ctx->enc_count = ctx->new_count; - ctx->enc_packmode = ctx->new_packmode; - ctx->enc_type = *ts; - ctx->is_complex = got_Z; - } - ++ts; - ctx->new_count = 1; - got_Z = 0; - break; - case ':': - ++ts; - while(*ts != ':') ++ts; - ++ts; - break; - case '(': - if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL; - break; - default: - { - int number = __Pyx_BufFmt_ExpectNumber(&ts); - if (number == -1) return NULL; - ctx->new_count = (size_t)number; - } - } - } -} -static CYTHON_INLINE void __Pyx_ZeroBuffer(Py_buffer* buf) { - buf->buf = NULL; - buf->obj = NULL; - buf->strides = __Pyx_zeros; - buf->shape = __Pyx_zeros; - buf->suboffsets = __Pyx_minusones; -} -static CYTHON_INLINE int __Pyx_GetBufferAndValidate( - Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags, - int nd, int cast, __Pyx_BufFmt_StackElem* stack) -{ - if (obj == Py_None || obj == NULL) { - __Pyx_ZeroBuffer(buf); - return 0; - } - buf->buf = NULL; - if (__Pyx_GetBuffer(obj, buf, flags) == -1) goto fail; - if (buf->ndim != nd) { - PyErr_Format(PyExc_ValueError, - "Buffer has wrong number of dimensions (expected %d, got %d)", - nd, buf->ndim); - goto fail; - } - if (!cast) { - __Pyx_BufFmt_Context ctx; - __Pyx_BufFmt_Init(&ctx, stack, dtype); - if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail; - } - if ((unsigned)buf->itemsize != dtype->size) { - PyErr_Format(PyExc_ValueError, - "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)", - buf->itemsize, (buf->itemsize > 1) ? "s" : "", - dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : ""); - goto fail; - } - if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones; - return 0; -fail:; - __Pyx_ZeroBuffer(buf); - return -1; -} -static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { - if (info->buf == NULL) return; - if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL; - __Pyx_ReleaseBuffer(info); -} - -static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { - PyObject *result; -#if CYTHON_COMPILING_IN_CPYTHON - result = PyDict_GetItem(__pyx_d, name); - if (result) { - Py_INCREF(result); - } else { -#else - result = PyObject_GetItem(__pyx_d, name); - if (!result) { - PyErr_Clear(); -#endif - result = __Pyx_GetBuiltinName(name); - } - return result; -} - -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { - PyObject *r; - if (!j) return NULL; - r = PyObject_GetItem(o, j); - Py_DECREF(j); - return r; -} -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck) { -#if CYTHON_COMPILING_IN_CPYTHON - if (wraparound & unlikely(i < 0)) i += PyList_GET_SIZE(o); - if ((!boundscheck) || likely((0 <= i) & (i < PyList_GET_SIZE(o)))) { - PyObject *r = PyList_GET_ITEM(o, i); - Py_INCREF(r); - return r; - } - return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); -#else - return PySequence_GetItem(o, i); -#endif -} -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck) { -#if CYTHON_COMPILING_IN_CPYTHON - if (wraparound & unlikely(i < 0)) i += PyTuple_GET_SIZE(o); - if ((!boundscheck) || likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) { - PyObject *r = PyTuple_GET_ITEM(o, i); - Py_INCREF(r); - return r; - } - return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); -#else - return PySequence_GetItem(o, i); -#endif -} -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, - int is_list, int wraparound, int boundscheck) { -#if CYTHON_COMPILING_IN_CPYTHON - if (is_list || PyList_CheckExact(o)) { - Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); - if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) { - PyObject *r = PyList_GET_ITEM(o, n); - Py_INCREF(r); - return r; - } - } - else if (PyTuple_CheckExact(o)) { - Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); - if ((!boundscheck) || likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) { - PyObject *r = PyTuple_GET_ITEM(o, n); - Py_INCREF(r); - return r; - } - } else { - PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence; - if (likely(m && m->sq_item)) { - if (wraparound && unlikely(i < 0) && likely(m->sq_length)) { - Py_ssize_t l = m->sq_length(o); - if (likely(l >= 0)) { - i += l; - } else { - if (PyErr_ExceptionMatches(PyExc_OverflowError)) - PyErr_Clear(); - else - return NULL; - } - } - return m->sq_item(o, i); - } - } -#else - if (is_list || PySequence_Check(o)) { - return PySequence_GetItem(o, i); - } -#endif - return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); -} - -static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { - if (unlikely(!type)) { - PyErr_SetString(PyExc_SystemError, "Missing type object"); - return 0; - } - if (likely(PyObject_TypeCheck(obj, type))) - return 1; - PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", - Py_TYPE(obj)->tp_name, type->tp_name); - return 0; -} - -static void __Pyx_RaiseBufferFallbackError(void) { - PyErr_SetString(PyExc_ValueError, - "Buffer acquisition failed on assignment; and then reacquiring the old buffer failed too!"); -} - -static CYTHON_INLINE PyObject* __Pyx_PyDict_Items(PyObject* d) { - if (PY_MAJOR_VERSION >= 3) - return __Pyx_PyObject_CallMethod1((PyObject*)&PyDict_Type, __pyx_n_s_items, d); - else - return PyDict_Items(d); -} - -static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { - PyErr_Format(PyExc_ValueError, - "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); -} - -static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { - PyErr_Format(PyExc_ValueError, - "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", - index, (index == 1) ? "" : "s"); -} - -static CYTHON_INLINE int __Pyx_IterFinish(void) { -#if CYTHON_COMPILING_IN_CPYTHON - PyThreadState *tstate = PyThreadState_GET(); - PyObject* exc_type = tstate->curexc_type; - if (unlikely(exc_type)) { - if (likely(exc_type == PyExc_StopIteration) || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)) { - PyObject *exc_value, *exc_tb; - exc_value = tstate->curexc_value; - exc_tb = tstate->curexc_traceback; - tstate->curexc_type = 0; - tstate->curexc_value = 0; - tstate->curexc_traceback = 0; - Py_DECREF(exc_type); - Py_XDECREF(exc_value); - Py_XDECREF(exc_tb); - return 0; - } else { - return -1; - } - } - return 0; -#else - if (unlikely(PyErr_Occurred())) { - if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) { - PyErr_Clear(); - return 0; - } else { - return -1; - } - } - return 0; -#endif -} - -static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { - if (unlikely(retval)) { - Py_DECREF(retval); - __Pyx_RaiseTooManyValuesError(expected); - return -1; - } else { - return __Pyx_IterFinish(); - } - return 0; -} - -static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { - PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); -} - -#if PY_MAJOR_VERSION < 3 -static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) { - #if PY_VERSION_HEX >= 0x02060000 - if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags); - #endif - if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags); - #if PY_VERSION_HEX < 0x02060000 - if (obj->ob_type->tp_dict) { - PyObject *getbuffer_cobj = PyObject_GetItem( - obj->ob_type->tp_dict, __pyx_n_s_pyx_getbuffer); - if (getbuffer_cobj) { - getbufferproc func = (getbufferproc) PyCObject_AsVoidPtr(getbuffer_cobj); - Py_DECREF(getbuffer_cobj); - if (!func) - goto fail; - return func(obj, view, flags); - } else { - PyErr_Clear(); - } - } - #endif - PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name); -#if PY_VERSION_HEX < 0x02060000 -fail: -#endif - return -1; -} -static void __Pyx_ReleaseBuffer(Py_buffer *view) { - PyObject *obj = view->obj; - if (!obj) return; - #if PY_VERSION_HEX >= 0x02060000 - if (PyObject_CheckBuffer(obj)) { - PyBuffer_Release(view); - return; - } - #endif - if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) { __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view); return; } - #if PY_VERSION_HEX < 0x02060000 - if (obj->ob_type->tp_dict) { - PyObject *releasebuffer_cobj = PyObject_GetItem( - obj->ob_type->tp_dict, __pyx_n_s_pyx_releasebuffer); - if (releasebuffer_cobj) { - releasebufferproc func = (releasebufferproc) PyCObject_AsVoidPtr(releasebuffer_cobj); - Py_DECREF(releasebuffer_cobj); - if (!func) - goto fail; - func(obj, view); - return; - } else { - PyErr_Clear(); - } - } - #endif - goto nofail; -#if PY_VERSION_HEX < 0x02060000 -fail: -#endif - PyErr_WriteUnraisable(obj); -nofail: - Py_DECREF(obj); - view->obj = NULL; -} -#endif /* PY_MAJOR_VERSION < 3 */ - - - static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { - PyObject *empty_list = 0; - PyObject *module = 0; - PyObject *global_dict = 0; - PyObject *empty_dict = 0; - PyObject *list; - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_import; - py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); - if (!py_import) - goto bad; - #endif - if (from_list) - list = from_list; - else { - empty_list = PyList_New(0); - if (!empty_list) - goto bad; - list = empty_list; - } - global_dict = PyModule_GetDict(__pyx_m); - if (!global_dict) - goto bad; - empty_dict = PyDict_New(); - if (!empty_dict) - goto bad; - #if PY_VERSION_HEX >= 0x02050000 - { - #if PY_MAJOR_VERSION >= 3 - if (level == -1) { - if (strchr(__Pyx_MODULE_NAME, '.')) { - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_level = PyInt_FromLong(1); - if (!py_level) - goto bad; - module = PyObject_CallFunctionObjArgs(py_import, - name, global_dict, empty_dict, list, py_level, NULL); - Py_DECREF(py_level); - #else - module = PyImport_ImportModuleLevelObject( - name, global_dict, empty_dict, list, 1); - #endif - if (!module) { - if (!PyErr_ExceptionMatches(PyExc_ImportError)) - goto bad; - PyErr_Clear(); - } - } - level = 0; /* try absolute import on failure */ - } - #endif - if (!module) { - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_level = PyInt_FromLong(level); - if (!py_level) - goto bad; - module = PyObject_CallFunctionObjArgs(py_import, - name, global_dict, empty_dict, list, py_level, NULL); - Py_DECREF(py_level); - #else - module = PyImport_ImportModuleLevelObject( - name, global_dict, empty_dict, list, level); - #endif - } - } - #else - if (level>0) { - PyErr_SetString(PyExc_RuntimeError, "Relative import is not supported for Python <=2.4."); - goto bad; - } - module = PyObject_CallFunctionObjArgs(py_import, - name, global_dict, empty_dict, list, NULL); - #endif -bad: - #if PY_VERSION_HEX < 0x03030000 - Py_XDECREF(py_import); - #endif - Py_XDECREF(empty_list); - Py_XDECREF(empty_dict); - return module; -} - -#define __PYX_VERIFY_RETURN_INT(target_type, func_type, func) \ - { \ - func_type value = func(x); \ - if (sizeof(target_type) < sizeof(func_type)) { \ - if (unlikely(value != (func_type) (target_type) value)) { \ - func_type zero = 0; \ - PyErr_SetString(PyExc_OverflowError, \ - (is_unsigned && unlikely(value < zero)) ? \ - "can't convert negative value to " #target_type : \ - "value too large to convert to " #target_type); \ - return (target_type) -1; \ - } \ - } \ - return (target_type) value; \ - } - -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - #include "longintrepr.h" - #endif -#endif -static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { - const int neg_one = (int) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; -#if PY_MAJOR_VERSION < 3 - if (likely(PyInt_Check(x))) { - if (sizeof(int) < sizeof(long)) { - __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG) - } else { - long val = PyInt_AS_LONG(x); - if (is_unsigned && unlikely(val < 0)) { - PyErr_SetString(PyExc_OverflowError, - "can't convert negative value to int"); - return (int) -1; - } - return (int) val; - } - } else -#endif - if (likely(PyLong_Check(x))) { - if (is_unsigned) { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - if (sizeof(digit) <= sizeof(int)) { - switch (Py_SIZE(x)) { - case 0: return 0; - case 1: return (int) ((PyLongObject*)x)->ob_digit[0]; - } - } - #endif -#endif - if (unlikely(Py_SIZE(x) < 0)) { - PyErr_SetString(PyExc_OverflowError, - "can't convert negative value to int"); - return (int) -1; - } - if (sizeof(int) <= sizeof(unsigned long)) { - __PYX_VERIFY_RETURN_INT(int, unsigned long, PyLong_AsUnsignedLong) - } else if (sizeof(int) <= sizeof(unsigned long long)) { - __PYX_VERIFY_RETURN_INT(int, unsigned long long, PyLong_AsUnsignedLongLong) - } - } else { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - if (sizeof(digit) <= sizeof(int)) { - switch (Py_SIZE(x)) { - case 0: return 0; - case 1: return +(int) ((PyLongObject*)x)->ob_digit[0]; - case -1: return -(int) ((PyLongObject*)x)->ob_digit[0]; - } - } - #endif -#endif - if (sizeof(int) <= sizeof(long)) { - __PYX_VERIFY_RETURN_INT(int, long, PyLong_AsLong) - } else if (sizeof(int) <= sizeof(long long)) { - __PYX_VERIFY_RETURN_INT(int, long long, PyLong_AsLongLong) - } - } - { -#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) - PyErr_SetString(PyExc_RuntimeError, - "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); -#else - int val; - PyObject *v = __Pyx_PyNumber_Int(x); - #if PY_MAJOR_VERSION < 3 - if (likely(v) && !PyLong_Check(v)) { - PyObject *tmp = v; - v = PyNumber_Long(tmp); - Py_DECREF(tmp); - } - #endif - if (likely(v)) { - int one = 1; int is_little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&val; - int ret = _PyLong_AsByteArray((PyLongObject *)v, - bytes, sizeof(val), - is_little, !is_unsigned); - Py_DECREF(v); - if (likely(!ret)) - return val; - } -#endif - return (int) -1; - } - } else { - int val; - PyObject *tmp = __Pyx_PyNumber_Int(x); - if (!tmp) return (int) -1; - val = __Pyx_PyInt_As_int(tmp); - Py_DECREF(tmp); - return val; - } -} - -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { - const long neg_one = (long) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; - if (is_unsigned) { - if (sizeof(long) < sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(long) <= sizeof(unsigned long)) { - return PyLong_FromUnsignedLong((unsigned long) value); - } else if (sizeof(long) <= sizeof(unsigned long long)) { - return PyLong_FromUnsignedLongLong((unsigned long long) value); - } - } else { - if (sizeof(long) <= sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(long) <= sizeof(long long)) { - return PyLong_FromLongLong((long long) value); - } - } - { - int one = 1; int little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&value; - return _PyLong_FromByteArray(bytes, sizeof(long), - little, !is_unsigned); - } -} - -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_int(unsigned int value) { - const unsigned int neg_one = (unsigned int) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; - if (is_unsigned) { - if (sizeof(unsigned int) < sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(unsigned int) <= sizeof(unsigned long)) { - return PyLong_FromUnsignedLong((unsigned long) value); - } else if (sizeof(unsigned int) <= sizeof(unsigned long long)) { - return PyLong_FromUnsignedLongLong((unsigned long long) value); - } - } else { - if (sizeof(unsigned int) <= sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(unsigned int) <= sizeof(long long)) { - return PyLong_FromLongLong((long long) value); - } - } - { - int one = 1; int little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&value; - return _PyLong_FromByteArray(bytes, sizeof(unsigned int), - little, !is_unsigned); - } -} - -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - #include "longintrepr.h" - #endif -#endif -static CYTHON_INLINE unsigned int __Pyx_PyInt_As_unsigned_int(PyObject *x) { - const unsigned int neg_one = (unsigned int) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; -#if PY_MAJOR_VERSION < 3 - if (likely(PyInt_Check(x))) { - if (sizeof(unsigned int) < sizeof(long)) { - __PYX_VERIFY_RETURN_INT(unsigned int, long, PyInt_AS_LONG) - } else { - long val = PyInt_AS_LONG(x); - if (is_unsigned && unlikely(val < 0)) { - PyErr_SetString(PyExc_OverflowError, - "can't convert negative value to unsigned int"); - return (unsigned int) -1; - } - return (unsigned int) val; - } - } else -#endif - if (likely(PyLong_Check(x))) { - if (is_unsigned) { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - if (sizeof(digit) <= sizeof(unsigned int)) { - switch (Py_SIZE(x)) { - case 0: return 0; - case 1: return (unsigned int) ((PyLongObject*)x)->ob_digit[0]; - } - } - #endif -#endif - if (unlikely(Py_SIZE(x) < 0)) { - PyErr_SetString(PyExc_OverflowError, - "can't convert negative value to unsigned int"); - return (unsigned int) -1; - } - if (sizeof(unsigned int) <= sizeof(unsigned long)) { - __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, PyLong_AsUnsignedLong) - } else if (sizeof(unsigned int) <= sizeof(unsigned long long)) { - __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long long, PyLong_AsUnsignedLongLong) - } - } else { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - if (sizeof(digit) <= sizeof(unsigned int)) { - switch (Py_SIZE(x)) { - case 0: return 0; - case 1: return +(unsigned int) ((PyLongObject*)x)->ob_digit[0]; - case -1: return -(unsigned int) ((PyLongObject*)x)->ob_digit[0]; - } - } - #endif -#endif - if (sizeof(unsigned int) <= sizeof(long)) { - __PYX_VERIFY_RETURN_INT(unsigned int, long, PyLong_AsLong) - } else if (sizeof(unsigned int) <= sizeof(long long)) { - __PYX_VERIFY_RETURN_INT(unsigned int, long long, PyLong_AsLongLong) - } - } - { -#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) - PyErr_SetString(PyExc_RuntimeError, - "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); -#else - unsigned int val; - PyObject *v = __Pyx_PyNumber_Int(x); - #if PY_MAJOR_VERSION < 3 - if (likely(v) && !PyLong_Check(v)) { - PyObject *tmp = v; - v = PyNumber_Long(tmp); - Py_DECREF(tmp); - } - #endif - if (likely(v)) { - int one = 1; int is_little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&val; - int ret = _PyLong_AsByteArray((PyLongObject *)v, - bytes, sizeof(val), - is_little, !is_unsigned); - Py_DECREF(v); - if (likely(!ret)) - return val; - } -#endif - return (unsigned int) -1; - } - } else { - unsigned int val; - PyObject *tmp = __Pyx_PyNumber_Int(x); - if (!tmp) return (unsigned int) -1; - val = __Pyx_PyInt_As_unsigned_int(tmp); - Py_DECREF(tmp); - return val; - } -} - -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { - return ::std::complex< float >(x, y); - } - #else - static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { - return x + y*(__pyx_t_float_complex)_Complex_I; - } - #endif -#else - static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { - __pyx_t_float_complex z; - z.real = x; - z.imag = y; - return z; - } -#endif - -#if CYTHON_CCOMPLEX -#else - static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - return (a.real == b.real) && (a.imag == b.imag); - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - z.real = a.real + b.real; - z.imag = a.imag + b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - z.real = a.real - b.real; - z.imag = a.imag - b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - z.real = a.real * b.real - a.imag * b.imag; - z.imag = a.real * b.imag + a.imag * b.real; - return z; - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - float denom = b.real * b.real + b.imag * b.imag; - z.real = (a.real * b.real + a.imag * b.imag) / denom; - z.imag = (a.imag * b.real - a.real * b.imag) / denom; - return z; - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex a) { - __pyx_t_float_complex z; - z.real = -a.real; - z.imag = -a.imag; - return z; - } - static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex a) { - return (a.real == 0) && (a.imag == 0); - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex a) { - __pyx_t_float_complex z; - z.real = a.real; - z.imag = -a.imag; - return z; - } - #if 1 - static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex z) { - #if !defined(HAVE_HYPOT) || defined(_MSC_VER) - return sqrtf(z.real*z.real + z.imag*z.imag); - #else - return hypotf(z.real, z.imag); - #endif - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - float r, lnr, theta, z_r, z_theta; - if (b.imag == 0 && b.real == (int)b.real) { - if (b.real < 0) { - float denom = a.real * a.real + a.imag * a.imag; - a.real = a.real / denom; - a.imag = -a.imag / denom; - b.real = -b.real; - } - switch ((int)b.real) { - case 0: - z.real = 1; - z.imag = 0; - return z; - case 1: - return a; - case 2: - z = __Pyx_c_prodf(a, a); - return __Pyx_c_prodf(a, a); - case 3: - z = __Pyx_c_prodf(a, a); - return __Pyx_c_prodf(z, a); - case 4: - z = __Pyx_c_prodf(a, a); - return __Pyx_c_prodf(z, z); - } - } - if (a.imag == 0) { - if (a.real == 0) { - return a; - } - r = a.real; - theta = 0; - } else { - r = __Pyx_c_absf(a); - theta = atan2f(a.imag, a.real); - } - lnr = logf(r); - z_r = expf(lnr * b.real - theta * b.imag); - z_theta = theta * b.real + lnr * b.imag; - z.real = z_r * cosf(z_theta); - z.imag = z_r * sinf(z_theta); - return z; - } - #endif -#endif - -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { - return ::std::complex< double >(x, y); - } - #else - static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { - return x + y*(__pyx_t_double_complex)_Complex_I; - } - #endif -#else - static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { - __pyx_t_double_complex z; - z.real = x; - z.imag = y; - return z; - } -#endif - -#if CYTHON_CCOMPLEX -#else - static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex a, __pyx_t_double_complex b) { - return (a.real == b.real) && (a.imag == b.imag); - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - z.real = a.real + b.real; - z.imag = a.imag + b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - z.real = a.real - b.real; - z.imag = a.imag - b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - z.real = a.real * b.real - a.imag * b.imag; - z.imag = a.real * b.imag + a.imag * b.real; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - double denom = b.real * b.real + b.imag * b.imag; - z.real = (a.real * b.real + a.imag * b.imag) / denom; - z.imag = (a.imag * b.real - a.real * b.imag) / denom; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex a) { - __pyx_t_double_complex z; - z.real = -a.real; - z.imag = -a.imag; - return z; - } - static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex a) { - return (a.real == 0) && (a.imag == 0); - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex a) { - __pyx_t_double_complex z; - z.real = a.real; - z.imag = -a.imag; - return z; - } - #if 1 - static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex z) { - #if !defined(HAVE_HYPOT) || defined(_MSC_VER) - return sqrt(z.real*z.real + z.imag*z.imag); - #else - return hypot(z.real, z.imag); - #endif - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - double r, lnr, theta, z_r, z_theta; - if (b.imag == 0 && b.real == (int)b.real) { - if (b.real < 0) { - double denom = a.real * a.real + a.imag * a.imag; - a.real = a.real / denom; - a.imag = -a.imag / denom; - b.real = -b.real; - } - switch ((int)b.real) { - case 0: - z.real = 1; - z.imag = 0; - return z; - case 1: - return a; - case 2: - z = __Pyx_c_prod(a, a); - return __Pyx_c_prod(a, a); - case 3: - z = __Pyx_c_prod(a, a); - return __Pyx_c_prod(z, a); - case 4: - z = __Pyx_c_prod(a, a); - return __Pyx_c_prod(z, z); - } - } - if (a.imag == 0) { - if (a.real == 0) { - return a; - } - r = a.real; - theta = 0; - } else { - r = __Pyx_c_abs(a); - theta = atan2(a.imag, a.real); - } - lnr = log(r); - z_r = exp(lnr * b.real - theta * b.imag); - z_theta = theta * b.real + lnr * b.imag; - z.real = z_r * cos(z_theta); - z.imag = z_r * sin(z_theta); - return z; - } - #endif -#endif - -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { - const int neg_one = (int) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; - if (is_unsigned) { - if (sizeof(int) < sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(int) <= sizeof(unsigned long)) { - return PyLong_FromUnsignedLong((unsigned long) value); - } else if (sizeof(int) <= sizeof(unsigned long long)) { - return PyLong_FromUnsignedLongLong((unsigned long long) value); - } - } else { - if (sizeof(int) <= sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(int) <= sizeof(long long)) { - return PyLong_FromLongLong((long long) value); - } - } - { - int one = 1; int little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&value; - return _PyLong_FromByteArray(bytes, sizeof(int), - little, !is_unsigned); - } -} - -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - #include "longintrepr.h" - #endif -#endif -static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { - const long neg_one = (long) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; -#if PY_MAJOR_VERSION < 3 - if (likely(PyInt_Check(x))) { - if (sizeof(long) < sizeof(long)) { - __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG) - } else { - long val = PyInt_AS_LONG(x); - if (is_unsigned && unlikely(val < 0)) { - PyErr_SetString(PyExc_OverflowError, - "can't convert negative value to long"); - return (long) -1; - } - return (long) val; - } - } else -#endif - if (likely(PyLong_Check(x))) { - if (is_unsigned) { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - if (sizeof(digit) <= sizeof(long)) { - switch (Py_SIZE(x)) { - case 0: return 0; - case 1: return (long) ((PyLongObject*)x)->ob_digit[0]; - } - } - #endif -#endif - if (unlikely(Py_SIZE(x) < 0)) { - PyErr_SetString(PyExc_OverflowError, - "can't convert negative value to long"); - return (long) -1; - } - if (sizeof(long) <= sizeof(unsigned long)) { - __PYX_VERIFY_RETURN_INT(long, unsigned long, PyLong_AsUnsignedLong) - } else if (sizeof(long) <= sizeof(unsigned long long)) { - __PYX_VERIFY_RETURN_INT(long, unsigned long long, PyLong_AsUnsignedLongLong) - } - } else { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - if (sizeof(digit) <= sizeof(long)) { - switch (Py_SIZE(x)) { - case 0: return 0; - case 1: return +(long) ((PyLongObject*)x)->ob_digit[0]; - case -1: return -(long) ((PyLongObject*)x)->ob_digit[0]; - } - } - #endif -#endif - if (sizeof(long) <= sizeof(long)) { - __PYX_VERIFY_RETURN_INT(long, long, PyLong_AsLong) - } else if (sizeof(long) <= sizeof(long long)) { - __PYX_VERIFY_RETURN_INT(long, long long, PyLong_AsLongLong) - } - } - { -#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) - PyErr_SetString(PyExc_RuntimeError, - "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); -#else - long val; - PyObject *v = __Pyx_PyNumber_Int(x); - #if PY_MAJOR_VERSION < 3 - if (likely(v) && !PyLong_Check(v)) { - PyObject *tmp = v; - v = PyNumber_Long(tmp); - Py_DECREF(tmp); - } - #endif - if (likely(v)) { - int one = 1; int is_little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&val; - int ret = _PyLong_AsByteArray((PyLongObject *)v, - bytes, sizeof(val), - is_little, !is_unsigned); - Py_DECREF(v); - if (likely(!ret)) - return val; - } -#endif - return (long) -1; - } - } else { - long val; - PyObject *tmp = __Pyx_PyNumber_Int(x); - if (!tmp) return (long) -1; - val = __Pyx_PyInt_As_long(tmp); - Py_DECREF(tmp); - return val; - } -} - -static int __Pyx_check_binary_version(void) { - char ctversion[4], rtversion[4]; - PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); - PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); - if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) { - char message[200]; - PyOS_snprintf(message, sizeof(message), - "compiletime version %s of module '%.100s' " - "does not match runtime version %s", - ctversion, __Pyx_MODULE_NAME, rtversion); - #if PY_VERSION_HEX < 0x02050000 - return PyErr_Warn(NULL, message); - #else - return PyErr_WarnEx(NULL, message, 1); - #endif - } - return 0; -} - -#ifndef __PYX_HAVE_RT_ImportModule -#define __PYX_HAVE_RT_ImportModule -static PyObject *__Pyx_ImportModule(const char *name) { - PyObject *py_name = 0; - PyObject *py_module = 0; - py_name = __Pyx_PyIdentifier_FromString(name); - if (!py_name) - goto bad; - py_module = PyImport_Import(py_name); - Py_DECREF(py_name); - return py_module; -bad: - Py_XDECREF(py_name); - return 0; -} -#endif - -#ifndef __PYX_HAVE_RT_ImportType -#define __PYX_HAVE_RT_ImportType -static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, - size_t size, int strict) -{ - PyObject *py_module = 0; - PyObject *result = 0; - PyObject *py_name = 0; - char warning[200]; - Py_ssize_t basicsize; -#ifdef Py_LIMITED_API - PyObject *py_basicsize; -#endif - py_module = __Pyx_ImportModule(module_name); - if (!py_module) - goto bad; - py_name = __Pyx_PyIdentifier_FromString(class_name); - if (!py_name) - goto bad; - result = PyObject_GetAttr(py_module, py_name); - Py_DECREF(py_name); - py_name = 0; - Py_DECREF(py_module); - py_module = 0; - if (!result) - goto bad; - if (!PyType_Check(result)) { - PyErr_Format(PyExc_TypeError, - "%.200s.%.200s is not a type object", - module_name, class_name); - goto bad; - } -#ifndef Py_LIMITED_API - basicsize = ((PyTypeObject *)result)->tp_basicsize; -#else - py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); - if (!py_basicsize) - goto bad; - basicsize = PyLong_AsSsize_t(py_basicsize); - Py_DECREF(py_basicsize); - py_basicsize = 0; - if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) - goto bad; -#endif - if (!strict && (size_t)basicsize > size) { - PyOS_snprintf(warning, sizeof(warning), - "%s.%s size changed, may indicate binary incompatibility", - module_name, class_name); - #if PY_VERSION_HEX < 0x02050000 - if (PyErr_Warn(NULL, warning) < 0) goto bad; - #else - if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; - #endif - } - else if ((size_t)basicsize != size) { - PyErr_Format(PyExc_ValueError, - "%.200s.%.200s has the wrong size, try recompiling", - module_name, class_name); - goto bad; - } - return (PyTypeObject *)result; -bad: - Py_XDECREF(py_module); - Py_XDECREF(result); - return NULL; -} -#endif - -static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { - int start = 0, mid = 0, end = count - 1; - if (end >= 0 && code_line > entries[end].code_line) { - return count; - } - while (start < end) { - mid = (start + end) / 2; - if (code_line < entries[mid].code_line) { - end = mid; - } else if (code_line > entries[mid].code_line) { - start = mid + 1; - } else { - return mid; - } - } - if (code_line <= entries[mid].code_line) { - return mid; - } else { - return mid + 1; - } -} -static PyCodeObject *__pyx_find_code_object(int code_line) { - PyCodeObject* code_object; - int pos; - if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { - return NULL; - } - pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); - if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { - return NULL; - } - code_object = __pyx_code_cache.entries[pos].code_object; - Py_INCREF(code_object); - return code_object; -} -static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { - int pos, i; - __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; - if (unlikely(!code_line)) { - return; - } - if (unlikely(!entries)) { - entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); - if (likely(entries)) { - __pyx_code_cache.entries = entries; - __pyx_code_cache.max_count = 64; - __pyx_code_cache.count = 1; - entries[0].code_line = code_line; - entries[0].code_object = code_object; - Py_INCREF(code_object); - } - return; - } - pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); - if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { - PyCodeObject* tmp = entries[pos].code_object; - entries[pos].code_object = code_object; - Py_DECREF(tmp); - return; - } - if (__pyx_code_cache.count == __pyx_code_cache.max_count) { - int new_max = __pyx_code_cache.max_count + 64; - entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( - __pyx_code_cache.entries, new_max*sizeof(__Pyx_CodeObjectCacheEntry)); - if (unlikely(!entries)) { - return; - } - __pyx_code_cache.entries = entries; - __pyx_code_cache.max_count = new_max; - } - for (i=__pyx_code_cache.count; i>pos; i--) { - entries[i] = entries[i-1]; - } - entries[pos].code_line = code_line; - entries[pos].code_object = code_object; - __pyx_code_cache.count++; - Py_INCREF(code_object); -} - -#include "compile.h" -#include "frameobject.h" -#include "traceback.h" -static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( - const char *funcname, int c_line, - int py_line, const char *filename) { - PyCodeObject *py_code = 0; - PyObject *py_srcfile = 0; - PyObject *py_funcname = 0; - #if PY_MAJOR_VERSION < 3 - py_srcfile = PyString_FromString(filename); - #else - py_srcfile = PyUnicode_FromString(filename); - #endif - if (!py_srcfile) goto bad; - if (c_line) { - #if PY_MAJOR_VERSION < 3 - py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); - #else - py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); - #endif - } - else { - #if PY_MAJOR_VERSION < 3 - py_funcname = PyString_FromString(funcname); - #else - py_funcname = PyUnicode_FromString(funcname); - #endif - } - if (!py_funcname) goto bad; - py_code = __Pyx_PyCode_New( - 0, /*int argcount,*/ - 0, /*int kwonlyargcount,*/ - 0, /*int nlocals,*/ - 0, /*int stacksize,*/ - 0, /*int flags,*/ - __pyx_empty_bytes, /*PyObject *code,*/ - __pyx_empty_tuple, /*PyObject *consts,*/ - __pyx_empty_tuple, /*PyObject *names,*/ - __pyx_empty_tuple, /*PyObject *varnames,*/ - __pyx_empty_tuple, /*PyObject *freevars,*/ - __pyx_empty_tuple, /*PyObject *cellvars,*/ - py_srcfile, /*PyObject *filename,*/ - py_funcname, /*PyObject *name,*/ - py_line, /*int firstlineno,*/ - __pyx_empty_bytes /*PyObject *lnotab*/ - ); - Py_DECREF(py_srcfile); - Py_DECREF(py_funcname); - return py_code; -bad: - Py_XDECREF(py_srcfile); - Py_XDECREF(py_funcname); - return NULL; -} -static void __Pyx_AddTraceback(const char *funcname, int c_line, - int py_line, const char *filename) { - PyCodeObject *py_code = 0; - PyObject *py_globals = 0; - PyFrameObject *py_frame = 0; - py_code = __pyx_find_code_object(c_line ? c_line : py_line); - if (!py_code) { - py_code = __Pyx_CreateCodeObjectForTraceback( - funcname, c_line, py_line, filename); - if (!py_code) goto bad; - __pyx_insert_code_object(c_line ? c_line : py_line, py_code); - } - py_globals = PyModule_GetDict(__pyx_m); - if (!py_globals) goto bad; - py_frame = PyFrame_New( - PyThreadState_GET(), /*PyThreadState *tstate,*/ - py_code, /*PyCodeObject *code,*/ - py_globals, /*PyObject *globals,*/ - 0 /*PyObject *locals*/ - ); - if (!py_frame) goto bad; - py_frame->f_lineno = py_line; - PyTraceBack_Here(py_frame); -bad: - Py_XDECREF(py_code); - Py_XDECREF(py_frame); -} - -static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { - while (t->p) { - #if PY_MAJOR_VERSION < 3 - if (t->is_unicode) { - *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); - } else if (t->intern) { - *t->p = PyString_InternFromString(t->s); - } else { - *t->p = PyString_FromStringAndSize(t->s, t->n - 1); - } - #else /* Python 3+ has unicode identifiers */ - if (t->is_unicode | t->is_str) { - if (t->intern) { - *t->p = PyUnicode_InternFromString(t->s); - } else if (t->encoding) { - *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); - } else { - *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); - } - } else { - *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); - } - #endif - if (!*t->p) - return -1; - ++t; - } - return 0; -} - -static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(char* c_str) { - return __Pyx_PyUnicode_FromStringAndSize(c_str, strlen(c_str)); -} -static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { - Py_ssize_t ignore; - return __Pyx_PyObject_AsStringAndSize(o, &ignore); -} -static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { -#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT - if ( -#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII - __Pyx_sys_getdefaultencoding_not_ascii && -#endif - PyUnicode_Check(o)) { -#if PY_VERSION_HEX < 0x03030000 - char* defenc_c; 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- return PyByteArray_AS_STRING(o); - } else -#endif -#endif - { - char* result; - int r = PyBytes_AsStringAndSize(o, &result, length); - if (unlikely(r < 0)) { - return NULL; - } else { - return result; - } - } -} -static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { - int is_true = x == Py_True; - if (is_true | (x == Py_False) | (x == Py_None)) return is_true; - else return PyObject_IsTrue(x); -} -static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) { - PyNumberMethods *m; - const char *name = NULL; - PyObject *res = NULL; -#if PY_MAJOR_VERSION < 3 - if (PyInt_Check(x) || PyLong_Check(x)) -#else - if (PyLong_Check(x)) -#endif - return Py_INCREF(x), x; - m = Py_TYPE(x)->tp_as_number; -#if PY_MAJOR_VERSION < 3 - if (m && m->nb_int) { - name = "int"; - res = PyNumber_Int(x); - } - else if (m && m->nb_long) { - name = "long"; - res = PyNumber_Long(x); - } -#else - if (m && m->nb_int) { - name = "int"; - res = PyNumber_Long(x); - } -#endif - if (res) { -#if PY_MAJOR_VERSION < 3 - if (!PyInt_Check(res) && !PyLong_Check(res)) { -#else - if (!PyLong_Check(res)) { -#endif - PyErr_Format(PyExc_TypeError, - "__%.4s__ returned non-%.4s (type %.200s)", - name, name, Py_TYPE(res)->tp_name); 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- return ival; -} -static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { -#if PY_VERSION_HEX < 0x02050000 - if (ival <= LONG_MAX) - return PyInt_FromLong((long)ival); - else { - unsigned char *bytes = (unsigned char *) &ival; - int one = 1; int little = (int)*(unsigned char*)&one; - return _PyLong_FromByteArray(bytes, sizeof(size_t), little, 0); - } -#else - return PyInt_FromSize_t(ival); -#endif -} - - -#endif /* Py_PYTHON_H */ diff --git a/cortex/polyutils.py b/cortex/polyutils.py index 82acc5efc..4832ced3c 100644 --- a/cortex/polyutils.py +++ b/cortex/polyutils.py @@ -266,6 +266,7 @@ def surface_gradient(self, scalars, at_verts=True): pu = scalars[self.polys] fe12, fe23, fe31 = [f.T for f in self._facenorm_cross_edge] pu1, pu2, pu3 = pu.T + fa = self.face_areas # numexpr is much faster than doing this using numpy! #gradu = ((fe12.T * pu[:,2] + diff --git a/cortex/quickflat.py b/cortex/quickflat.py index 282aad224..0a50b6f0e 100644 --- a/cortex/quickflat.py +++ b/cortex/quickflat.py @@ -15,7 +15,8 @@ def make_figure(braindata, recache=False, pixelwise=True, thick=32, sampler='nea with_dropout=False, with_curvature=False, extra_disp=None, linewidth=None, linecolor=None, roifill=None, shadow=None, labelsize=None, labelcolor=None, cutout=None, cvmin=None, - cvmax=None, cvthr=None, fig=None,**kwargs): + cvmax=None, cvthr=None, fig=None, extra_hatch=None, + colorbar_ticks=None, **kwargs): """Show a Volume or Vertex on a flatmap with matplotlib. Additional kwargs are passed on to matplotlib's imshow command. @@ -63,11 +64,13 @@ def make_figure(braindata, recache=False, pixelwise=True, thick=32, sampler='nea Maximum value for background curvature colormap. Defaults to config file value. cvthr : bool,optional Apply threshold to background curvature - extra_disp : tuple + extra_disp : tuple, optional Optional extra display layer from external .svg file. Tuple specifies (filename,layer) filename should be a full path. External svg file should be structured exactly as rois.svg for the subject. (Best to just copy rois.svg somewhere else and add layers to it) Default value is None. + extra_hatch : tuple, optional + Optional extra crosshatch-textured layer, given as (DataView, [r, g, b]) tuple. """ from matplotlib import colors,cm, pyplot as plt @@ -172,6 +175,9 @@ def make_figure(braindata, recache=False, pixelwise=True, thick=32, sampler='nea cm.register_cmap(dataview.cmap,cmap) else: cmap = dataview.cmap + elif isinstance(dataview.cmap,colors.Colormap): + # Allow input of matplotlib colormap class + cmap = dataview.cmap kwargs.update( cmap=cmap, vmin=dataview.vmin, @@ -185,7 +191,8 @@ def make_figure(braindata, recache=False, pixelwise=True, thick=32, sampler='nea if with_colorbar: cbar = fig.add_axes((.4, .07, .2, .04)) - fig.colorbar(cimg, cax=cbar, orientation='horizontal') + fig.colorbar(cimg, cax=cbar, orientation='horizontal', + ticks=colorbar_ticks) if with_dropout is not False: if isinstance(with_dropout, dataset.Dataview): @@ -199,17 +206,20 @@ def make_figure(braindata, recache=False, pixelwise=True, thick=32, sampler='nea dropout_data = utils.get_dropout(dataview.subject, dataview.xfmname, power=dropout_power) - dmap, ee = make(dropout_data, height=height, sampler=sampler) + hatchim = _make_hatch_image(dropout_data, height, sampler) + if cutout: hatchim[:,:,3]*=co dax = fig.add_axes((0,0,1,1)) - - # Create cross-hatch image - hx, hy = np.meshgrid(range(dmap.shape[1]), range(dmap.shape[0])) - hatchspace = 4 - hatchpat = (hx+hy)%(2*hatchspace) < 2 - hatchpat = np.logical_or(hatchpat, hatchpat[:,::-1]).astype(float) - hatchim = np.dstack([1-hatchpat]*3 + [hatchpat]) - hatchim[:,:,3] *= (dmap>0.5).astype(float) + dax.imshow(hatchim[iy[1]:iy[0]:-1,ix[0]:ix[1]], aspect="equal", + interpolation="nearest", extent=extents, origin='lower') + + if extra_hatch is not None: + hatch_data, hatch_color = extra_hatch + hatchim = _make_hatch_image(hatch_data, height, sampler) + hatchim[:,:,0] = hatch_color[0] + hatchim[:,:,1] = hatch_color[1] + hatchim[:,:,2] = hatch_color[2] if cutout: hatchim[:,:,3]*=co + dax = fig.add_axes((0,0,1,1)) dax.imshow(hatchim[iy[1]:iy[0]:-1,ix[0]:ix[1]], aspect="equal", interpolation="nearest", extent=extents, origin='lower') @@ -254,7 +264,7 @@ def make_figure(braindata, recache=False, pixelwise=True, thick=32, sampler='nea svgfile=svgfile) overlays.append(disp) for oo in overlays: - roitex = oo.get_texture(height, labels=with_labels) + roitex = oo.get_texture(height, labels=with_labels, size=labelsize) roitex.seek(0) oax = fig.add_axes((0,0,1,1)) roi_im = plt.imread(roitex) @@ -334,7 +344,8 @@ def make_png(fname, braindata, recache=False, pixelwise=True, sampler='nearest', fig.savefig(fname, transparent=True, dpi=dpi) else: fig.savefig(fname, facecolor=bgcolor, transparent=False, dpi=dpi) - plt.close() + fig.clf() + plt.close(fig) def make_svg(fname, braindata, recache=False, pixelwise=True, sampler='nearest', height=1024, thick=32, depth=0.5, **kwargs): dataview = dataset.normalize(braindata) @@ -517,6 +528,16 @@ def get_flatcache(subject, xfmname, pixelwise=True, thick=32, sampler='nearest', return pixmap +def _make_hatch_image(dropout_data, height, sampler): + dmap, ee = make(dropout_data, height=height, sampler=sampler) + hx, hy = np.meshgrid(range(dmap.shape[1]), range(dmap.shape[0])) + hatchspace = 4 + hatchpat = (hx+hy)%(2*hatchspace) < 2 + hatchpat = np.logical_or(hatchpat, hatchpat[:,::-1]).astype(float) + hatchim = np.dstack([1-hatchpat]*3 + [hatchpat]) + hatchim[:,:,3] *= np.clip(dmap, 0, 1).astype(float) + + return hatchim def _make_flatmask(subject, height=1024): from . import polyutils diff --git a/cortex/svgroi.py b/cortex/svgroi.py index 2fcae9e9b..0cb119fdb 100644 --- a/cortex/svgroi.py +++ b/cortex/svgroi.py @@ -789,8 +789,8 @@ def set(self, linewidth=None, linecolor=None, roifill=None, shadow=None, hide=No linecolor = np.array(self.linecolor)*255 hide = "display:none;" if self.hide else "" style = style.format( - fill="rgb(%d,%d,%d)"%tuple(roifill[:-1]), fo=roifill[-1], - lc="rgb(%d,%d,%d)"%tuple(linecolor[:-1]), lo=linecolor[-1], + fill="rgb(%d,%d,%d)"%tuple(roifill[:-1]), fo=roifill[-1]/255.0, + lc="rgb(%d,%d,%d)"%tuple(linecolor[:-1]), lo=linecolor[-1]/255.0, lw=self.linewidth, hide=hide) # Deal with dashed lines, on a path-by-path basis for path in self.paths: diff --git a/cortex/volume.py b/cortex/volume.py index 520b329eb..73c2a7c27 100644 --- a/cortex/volume.py +++ b/cortex/volume.py @@ -149,7 +149,7 @@ def show_slice(dataview, **kwargs): imshow_kw.update(kwargs) anat = db.get_anat(subject, 'raw').get_data().T - data = epi2anatspace(dataview.volume.squeeze()) + data = epi2anatspace(dataview) data[data < dataview.vmin] = np.nan @@ -224,7 +224,7 @@ def epi2anatspace(volumedata, order=1): """ from scipy.ndimage.interpolation import affine_transform ds = dataset.normalize(volumedata) - volumedata = ds.data + volumedata = ds#.data anat = db.get_anat(volumedata.subject, "raw") xfm = db.get_xfm(volumedata.subject, volumedata.xfmname, "coord") @@ -234,7 +234,9 @@ def epi2anatspace(volumedata, order=1): rotpart = allxfm.xfm[:3, :3] transpart = allxfm.xfm[:3,-1] - return affine_transform(volumedata.volume.T, rotpart, offset=transpart, output_shape=anat.shape[::-1], cval=np.nan, order=order).T + return affine_transform(volumedata.volume.T.squeeze(), rotpart, + offset=transpart, output_shape=anat.shape[::-1], + cval=np.nan, order=order).T def anat2epispace(anatdata, subject, xfmname, order=1): from scipy.ndimage.interpolation import affine_transform diff --git a/cortex/webgl/resources/css/jquery.miniColors.css b/cortex/webgl/resources/css/jquery.miniColors.css index e4202eafd..e6c446763 100644 --- a/cortex/webgl/resources/css/jquery.miniColors.css +++ b/cortex/webgl/resources/css/jquery.miniColors.css @@ -7,7 +7,7 @@ } .minicolors-no-data-uris .minicolors-sprite { - background-image: url(jquery.minicolors.png); + background-image: url(../images/colors.png); } .minicolors-swatch { @@ -265,4 +265,4 @@ .minicolors-theme-bootstrap .minicolors-input.input-sm + .minicolors-swatch { width: 24px; height: 24px; -} \ No newline at end of file +} diff --git a/cortex/webgl/resources/js/svgroi.js b/cortex/webgl/resources/js/svgroi.js index 4af0bf38e..2fc6fd35c 100644 --- a/cortex/webgl/resources/js/svgroi.js +++ b/cortex/webgl/resources/js/svgroi.js @@ -154,8 +154,20 @@ ROIpack.prototype = { lc = "stroke:" + lc; lw = "stroke-width:" + lw + "px"; sw = parseInt(sw); - + + //WIP! + //style_array = [fo, lo, fc, lc, lw] + //(Then set style_array per path?) or set style first, then only update strokeDasharray per path? + oldstyle = this.layers[layer].attr("style") + console.log(oldstyle) // Hrm. This appears to be too late - the style has already been set before this prints out. Why? + // ...I thought this next line set the style...? this.layers[layer].attr("style", [fo, lo, fc, lc, lw].join(";")); + // loop over paths + // PROBLEM: Still need to find wth the read-in svg line styles are. Must be where we got paths... but fuck if I know. + // for (var pth=0; pth