update gha workflows

Author: mpadge

.github/workflows/check-standard.yaml .github/workflows/R-CMD-check.yaml.github/workflows/check-standard.yaml renamed to .github/workflows/R-CMD-check.yaml

@@ -1,10 +1,13 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches: main
+    branches: [main, master]
   pull_request:
-    branches: main
 
-name: R-CMD-check
+name: R-CMD-check.yaml
+
+permissions: read-all
 
 jobs:
   R-CMD-check:
@@ -16,14 +19,13 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          # - {os: macos-latest,   r: 'release'}
-            #- {os: windows-latest, r: 'release'}
+          - {os: macos-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
           - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
           - {os: ubuntu-latest,   r: 'release'}
-            # - {os: ubuntu-latest,   r: 'oldrel-1'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
 
     env:
-      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       R_KEEP_PKG_SOURCE: yes
 
@@ -46,3 +48,4 @@ jobs:
       - uses: r-lib/actions/check-r-package@v2
         with:
           upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

.github/workflows/test-coverage.yaml

@@ -34,15 +34,16 @@ jobs:
             clean = FALSE,
             install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
           )
+          print(cov)
           covr::to_cobertura(cov)
         shell: Rscript {0}
 
-      - uses: codecov/codecov-action@v4
+      - uses: codecov/codecov-action@v5
         with:
           # Fail if error if not on PR, or if on PR and token is given
           fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
-          file: ./cobertura.xml
-          plugin: noop
+          files: ./cobertura.xml
+          plugins: noop
           disable_search: true
           token: ${{ secrets.CODECOV_TOKEN }}
 

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: uaengine
 Title: Routing and aggregation engine for 'Urban Analyst'
-Version: 0.3.2.016
+Version: 0.3.2.017
 Authors@R: 
     person(given = "Mark",
            family = "Padgham",

codemeta.json

@@ -7,7 +7,7 @@
   "codeRepository": "https://github.com/UrbanAnalyst/uaengine",
   "issueTracker": "https://github.com/UrbanAnalyst/uaengine/issues",
   "license": "https://spdx.org/licenses/GPL-3.0",
-  "version": "0.3.2.016",
+  "version": "0.3.2.017",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",