Switch to uv and Quarto in GHA workflow

Author: stephan-koenig

.github/workflows/main.yml

@@ -9,62 +9,45 @@ on:
 
 # This job installs dependencies, build the book, and pushes it to `gh-pages`
 jobs:
+  render-knitr-quarto:
+    uses: ./.github/workflows/render-knitr-quarto.yml
+
   deploy-book:
     runs-on: ubuntu-latest
+    needs: render-knitr-quarto
+
     steps:
     - uses: actions/checkout@v4
 
     # Install dependencies
-    - name: Set up Python 3.10
-      uses: actions/setup-python@v5
-      with:
-        python-version: "3.10"
-
-    - name: cache installation
-      uses: actions/cache@v3
-      with:
-        path: ${{ env.pythonLocation }}
-        key: ${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}-${{ hashFiles('requirements.txt') }}
+    - name: Set up Quarto
+      uses: quarto-dev/quarto-actions/setup@v2
 
-    - name: Install dependencies
-      run: |
-        pip install -r requirements.txt
-    # Build the book
-    - name: Build the book
-      run: |
-        jupyter-book build .
+    - name: Install uv
+      uses: astral-sh/setup-uv@v6
 
-    # Push the book's HTML to github-pages
-    - name: GitHub Pages action
-      uses: peaceiris/actions-gh-pages@v4
-      if: ${{ github.ref == 'refs/heads/main' }}
+    # GitHub caches Python versions with the runner thus likely faster than uv
+    - name: Set up Python
+      uses: actions/setup-python@v5
       with:
-        github_token: ${{ secrets.GITHUB_TOKEN }}
-        publish_dir: ./_build/html
-        
-    # # Push to CS server
-    # - name: rsync and ssh to CS
-    #   env:
-    #     COURSE_REMOTE_HOST: kunghit.students.cs.ubc.ca
-    #     COURSE_REMOTE_USER: cs-330
-    #     CS_REMOTE_USER: firasm
-    #     CS_TUNNEL: remote.cs.ubc.ca
-    #     REMOTE_KEY: ${{ secrets.FIRAS_SERVER_SSH_KEY }}
-    #     FIRAS_KEYBOARDMBP: ${{ secrets.FIRAS_KEYBOARDMBP }}
-    #     TERM: 2024_W1
-    #     LOCAL_DIR: _build/html/
-    #   run: |
-    #     mkdir -p ~/.ssh
-    #     echo "$REMOTE_KEY" > ~/.ssh/id_rsa
-    #     chmod 600 ~/.ssh/id_rsa
-    #     ssh-keyscan -H $CS_TUNNEL >> ~/.ssh/known_hosts
-
-    #     echo "$FIRAS_KEYBOARDMBP" > ~/.ssh/id_ed25519
-    #     chmod 600 ~/.ssh/id_ed25519
-
-    #     # Set up a tunnel in the background
-    #     ssh -fN -L 2222:$COURSE_REMOTE_HOST:22 $CS_REMOTE_USER@$CS_TUNNEL -p 22
-
-    #     # send files all in one shot
-    #     rsync -avzr -e 'ssh -p 22 -o StrictHostKeyChecking=no -J $CS_REMOTE_USER@$CS_TUNNEL' $LOCAL_DIR $COURSE_REMOTE_USER@$COURSE_REMOTE_HOST:public_html/$TERM
-
+        python-version-file: "pyproject.toml"
+
+    - name: Install Python dependencies
+      run: uv sync --locked --all-extras
+
+      - name: Install R
+        uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: '4.2.0'
+
+      - name: Install R Dependencies
+        uses: r-lib/actions/setup-renv@v2
+        with:
+          cache-version: 1
+
+      - name: Render and Publish Quarto project
+        uses: quarto-dev/quarto-actions/publish@v2
+        with:
+          target: gh-pages
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

pyproject.toml

@@ -0,0 +1,10 @@
+[project]
+name = "cpsc203"
+version = "0.1.0"
+description = "Add your description here"
+readme = "README.md"
+requires-python = ">=3.13"
+dependencies = [
+    "jupyter>=1.1.1",
+    "numpy>=2.3.1",
+]