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pipe placeholder needs R >= 4.2.0
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DESCRIPTION

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@@ -24,7 +24,7 @@ URL: https://github.com/TalhoukLab/nanostringr/,
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https://talhouklab.github.io/nanostringr/
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BugReports: https://github.com/TalhoukLab/nanostringr/issues
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Depends:
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R (>= 4.1)
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R (>= 4.2)
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Imports:
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assertthat,
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ccaPP,

NEWS.md

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# nanostringr 0.6.0
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* Replace magrittr pipe with native pipe, subsequently increase minimum R version to 4.1
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* Replace magrittr pipe with native pipe, subsequently increase minimum R version to 4.2
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* Update `read_rcc()` to replace gene names PD1 with PD-1 and PDL1 with PD-L1
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# nanostringr 0.5.0

R/read_rcc.R

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@@ -75,7 +75,7 @@ parse_counts <- function(file) {
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cs_last <- grep("</Code_Summary>", rcc_file) - 1
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rcc_file[cs_header:cs_last] |>
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paste(collapse = "\n") |>
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utils::read.csv(stringsAsFactors = FALSE, text = _) |>
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utils::read.csv(text = _) |>
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dplyr::rename(Code.Class = "CodeClass", !!sample_name := "Count") |>
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dplyr::as_tibble()
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}

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