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@DataBiosphere

Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

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  1. toil toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    Python 915 242

  2. dsub dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    Python 270 47

  3. terra-ui terra-ui Public

    Web user interface for the Terra platform

    TypeScript 54 21

  4. leonardo leonardo Public

    Notebook service

    Scala 44 21

  5. terra-docker terra-docker Public

    Jupyter Notebook 30 35

  6. job-manager job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    TypeScript 26 5

Repositories

Showing 10 of 162 repositories
  • azul-resumablehash Public Forked from luke-moore/resumablesha256

    An sha256 hasher whose state can be saved and loaded, using B-Con's sha256 C implementation for speed.

    DataBiosphere/azul-resumablehash’s past year of commit activity
    C 0 Unlicense 1 0 0 Updated Jul 20, 2025
  • azul Public

    Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

    DataBiosphere/azul’s past year of commit activity
    Python 8 Apache-2.0 2 738 15 Updated Jul 20, 2025
  • welder Public
    DataBiosphere/welder’s past year of commit activity
    Scala 3 MIT 3 0 2 Updated Jul 18, 2025
  • duos-ui Public

    Broad Institute Data Use Oversight System

    DataBiosphere/duos-ui’s past year of commit activity
    JavaScript 10 BSD-3-Clause 4 0 3 Updated Jul 18, 2025
  • terra-external-credentials-manager Public
    DataBiosphere/terra-external-credentials-manager’s past year of commit activity
    Java 5 BSD-3-Clause 0 0 2 Updated Jul 18, 2025
  • consent Public

    Broad Institute Data Use Oversight System

    DataBiosphere/consent’s past year of commit activity
    Java 11 BSD-3-Clause 2 0 3 Updated Jul 18, 2025
  • leonardo Public

    Notebook service

    DataBiosphere/leonardo’s past year of commit activity
    Scala 44 BSD-3-Clause 21 1 20 Updated Jul 18, 2025
  • jade-data-repo Public

    The Terra Data Repository built by the Jade team.

    DataBiosphere/jade-data-repo’s past year of commit activity
    Java 13 BSD-3-Clause 5 0 2 Updated Jul 18, 2025
  • toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    DataBiosphere/toil’s past year of commit activity
    Python 915 Apache-2.0 242 394 5 Updated Jul 17, 2025
  • wdl-conformance-tests Public
    DataBiosphere/wdl-conformance-tests’s past year of commit activity
    Python 2 Apache-2.0 0 1 0 Updated Jul 17, 2025
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