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fix OPM test to be more flexible. Install blast on all OSs except windows
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.github/workflows/test.yml

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@@ -43,8 +43,9 @@ jobs:
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# # for testing CDPKit SmallMol
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# pip install CDPKit
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- name: Install blast
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run: conda install -c bioconda blast -y
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- name: Install blast for OPM tests
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if: ${{ matrix.os != 'windows-2022' }}
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run: conda install -c bioconda blast -y -q
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- name: Install moleculekit
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run: |

tests/test_opm.py

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@@ -14,10 +14,8 @@ def _test_align_opm():
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mol = Molecule("7y89")
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res = align_to_opm(mol)
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assert len(res) == 3
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assert res[0]["pdbid"] == "6DDE"
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assert res[0]["thickness"] == 31.4
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molaln = res[0]["hsps"][0]["aligned_mol"]
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assert molaln.numAtoms == 8641
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assert molaln.coords.shape == (8641, 3, 1)
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@pytest.mark.skipif(

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