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lines changed Original file line number Diff line number Diff line change 43
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# # for testing CDPKit SmallMol
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# pip install CDPKit
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- - name : Install blast
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- run : conda install -c bioconda blast -y
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+ - name : Install blast for OPM tests
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+ if : ${{ matrix.os != 'windows-2022' }}
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+ run : conda install -c bioconda blast -y -q
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- name : Install moleculekit
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run : |
Original file line number Diff line number Diff line change @@ -14,10 +14,8 @@ def _test_align_opm():
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mol = Molecule ("7y89" )
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res = align_to_opm (mol )
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assert len (res ) == 3
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- assert res [0 ]["pdbid" ] == "6DDE"
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- assert res [0 ]["thickness" ] == 31.4
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molaln = res [0 ]["hsps" ][0 ]["aligned_mol" ]
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- assert molaln .numAtoms == 8641
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+ assert molaln .coords . shape == ( 8641 , 3 , 1 )
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@pytest .mark .skipif (
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