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2 | 2 |
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3 | 3 | ## v0.X Series
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4 | 4 |
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| 5 | +### v0.11.27 (2022-04-04) |
| 6 | + |
| 7 | +New features: |
| 8 | +* Checking condition number when computing sensitivities via Newton |
| 9 | + by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/1730 |
| 10 | +* Removed SPBCG solver by @FFroehlich in |
| 11 | + https://github.com/AMICI-dev/AMICI/pull/1729 |
| 12 | +* Added Newton step convergence checks to steadystate solver by @FFroehlich in |
| 13 | + https://github.com/AMICI-dev/AMICI/pull/1737 |
| 14 | +* Removed legacy options/members `amioption.newton_preeq` and `Solver::r… by |
| 15 | + @dweindl in https://github.com/AMICI-dev/AMICI/pull/1744 |
| 16 | +* Added `ReturnData::cpu_time_total` to track total time spent in |
| 17 | + `runAmiciSimulation` by @dweindl in |
| 18 | + https://github.com/AMICI-dev/AMICI/pull/1743 |
| 19 | +* SBML import: Alternative algorithm for identifying conservation laws by |
| 20 | + @dweindl in https://github.com/AMICI-dev/AMICI/pull/1748 |
| 21 | +* Use `amici.AmiciVersionError` to indicate version mismatch by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1764 |
| 22 | + |
| 23 | +Performance: |
| 24 | +* Optional parallel computation of derivatives during model import by @dweindl |
| 25 | + in https://github.com/AMICI-dev/AMICI/pull/1740 |
| 26 | +* Sparsify jacobian by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/1766 |
| 27 | +* Speedup for models with conservation laws by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/1765 |
| 28 | +* Speedup conservation law computation by @FFroehlich in |
| 29 | + https://github.com/AMICI-dev/AMICI/pull/1754 |
| 30 | +* Exploit stoichiometric matrix in pysb import by @FFroehlich in |
| 31 | + https://github.com/AMICI-dev/AMICI/pull/1761 |
| 32 | +* Speedup edata construction from petab problems by @FFroehlich in |
| 33 | + https://github.com/AMICI-dev/AMICI/pull/1746 |
| 34 | + |
| 35 | +Fixes: |
| 36 | +* Fixed `get_model_settings` that would to setting incorrect initial states and |
| 37 | + initial state sensitivities for models with parameter-dependent initial |
| 38 | + states by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1751 |
| 39 | +* Use correct tolerances for convergence check in Newton solver by @FFroehlich |
| 40 | + in https://github.com/AMICI-dev/AMICI/pull/1728 |
| 41 | +* Harmonized convergence checks by @FFroehlich in |
| 42 | + https://github.com/AMICI-dev/AMICI/pull/1731 |
| 43 | +* Made sundials' KLU_INDEXTYPE match actual klu index type by @dweindl in |
| 44 | + https://github.com/AMICI-dev/AMICI/pull/1733 |
| 45 | +* Fixed `Model::setStateIsNonNegative` logic that would raise exceptions in |
| 46 | + cases where it shouldn't by @dweindl in |
| 47 | + https://github.com/AMICI-dev/AMICI/pull/1736 |
| 48 | +* Fixed undefined reference to dladdr by @kristianmeyerr in |
| 49 | + https://github.com/AMICI-dev/AMICI/pull/1738 |
| 50 | +* Fixed HDF5 OSX intermediate group creation errors by @dweindl in |
| 51 | + https://github.com/AMICI-dev/AMICI/pull/1741 |
| 52 | +* Fixed recent cmake-based build issues due to changed sundials library |
| 53 | + directory by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1756 |
| 54 | +* Updated Windows installation instructions by @paulflang in |
| 55 | + https://github.com/AMICI-dev/AMICI/pull/1763 |
| 56 | + |
| 57 | +... and other contributions by @FFroehlich, @dweindl |
| 58 | + |
| 59 | +**Full Changelog**: |
| 60 | +https://github.com/AMICI-dev/AMICI/compare/v0.11.26...v0.11.27 |
| 61 | + |
5 | 62 | ### v0.11.26 (2022-03-14)
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6 | 63 |
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7 | 64 | New features:
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