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Release 0.11.24
Merge pull request #1644 from AMICI-dev/release_0.11.24
2 parents 287364e + cdf46a5 commit d142fb7

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‎.github/workflows/deploy_branch.yml

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runs-on: ubuntu-20.04
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strategy:
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matrix:
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python-version: [3.8]
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steps:
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- uses: actions/checkout@master
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with:
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fetch-depth: 20

‎.github/workflows/deploy_protected.yml

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runs-on: ubuntu-20.04
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strategy:
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matrix:
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python-version: [3.8]
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steps:
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- uses: actions/checkout@master
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- run: git archive -o docker/amici.tar.gz --format=tar.gz HEAD
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- name: Publish to Registry

‎.github/workflows/deploy_release.yml

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strategy:
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steps:
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- uses: actions/checkout@master
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fetch-depth: 20

‎.github/workflows/test_benchmark_collection_models.yml

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strategy:
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python-version: [ 3.8 ]
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steps:
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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fetch-depth: 20

‎.github/workflows/test_doc.yml

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strategy:
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python-version: [3.8]
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steps:
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- uses: actions/checkout@master
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- run: git fetch --prune --unshallow
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runs-on: ubuntu-20.04
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strategy:
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python-version: [ 3.8 ]
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- uses: actions/checkout@master
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- run: git fetch --prune --unshallow
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run: |
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sudo scripts/downloadAndBuildDoxygen.sh
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- name: Set up Python 3.8
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uses: actions/setup-python@v2
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with:
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# Semantic version range syntax or exact version of a Python version
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python-version: '3.8'
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# install amici dependencies
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- name: apt
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run: |

‎.github/workflows/test_install.yml

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steps:
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- uses: actions/checkout@master
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- run: git fetch --prune --unshallow
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runs-on: ubuntu-20.04
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strategy:
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python-version: [3.8]
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steps:
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- uses: actions/checkout@master
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- run: git fetch --prune --unshallow
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‎.github/workflows/test_performance.yml

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strategy:
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steps:
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- uses: actions/checkout@master
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fetch-depth: 20
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run: |
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sudo apt-get update \
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&& sudo apt-get install -y swig libatlas-base-dev
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- run: pip3 install petab shyaml
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- run: pip3 install petab shyaml build
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- run: echo "${HOME}/.local/bin/" >> $GITHUB_PATH
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- run: echo "${GITHUB_WORKSPACE}/tests/performance/" >> $GITHUB_PATH
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- name: Create AMICI sdist
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cd python/sdist \
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&& check_time.sh create_sdist /usr/bin/python3 setup.py sdist
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&& check_time.sh create_sdist python3 -m build --sdist
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- name: Install AMICI sdist
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run: |
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AMICI_PARALLEL_COMPILE=2 check_time.sh \

‎.github/workflows/test_petab_test_suite.yml

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env:
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ENABLE_GCOV_COVERAGE: TRUE
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python-version: [3.8]
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steps:
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- uses: actions/checkout@master
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fetch-depth: 20

‎.github/workflows/test_pypi.yml

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fail-fast: false
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python-version: [3.7, 3.8, 3.9]
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python-version: [3.8, 3.9, '3.10']
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os: [ubuntu-20.04, macos-latest]
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runs-on: ${{ matrix.os }}

‎.github/workflows/test_python_cplusplus.yml

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ENABLE_GCOV_COVERAGE: "TRUE"
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- uses: actions/checkout@master
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- run: git fetch --prune --unshallow
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