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Have you checked for an existing issue describing the issue?
This is more of a question if e37cf98 was incomplete, prompted by a question on discord that lead to me looking at the code. It added the -r FreeBSD in:
if ! JNETNAME="n" injail env ASSUME_ALWAYS_YES=yes \
PACKAGESITE="${packagesite:?}" \
${pkg_bin} update -f -r FreeBSD; then
msg "Package fetch: Not fetching as remote repository is unavailable."
rm -f "${missing_pkgs}"
return 0
fi
The following code is:
# Don't trust pkg-update to return its error
if ! injail ${pkg_bin} rquery -U %n pkg >/dev/null; then
msg "Package fetch: Failed to fetch package repository."
rm -f "${missing_pkgs}"
return 0
fi
Should the rquery also have a -r FreeBSD to match?